ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    23646
interactions:    597570
pathways:    1357


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Yeastcyc Ptm Intact Dip Mint Biogrid Mips-mpact Bind Pdb Pindb Cyc2008 Wikipathways
Reactome 3226 221 104 0 107 70 85 123 44 0 20 9 0 0
Kegg 221 1197 231 0 0 0 0 0 0 0 0 0 0 0
Yeastcyc 104 231 1440 0 25 18 27 35 11 1 4 0 0 0
Ptm 0 0 0 351 0 0 0 0 0 0 0 0 0 0
Intact 107 0 25 0 49815 7593 16335 19541 2552 3 499 42 0 0
Dip 70 0 18 0 7593 24561 13067 14240 5117 6 436 20 0 0
Mint 85 0 27 0 16335 13067 25843 19987 4463 6 391 11 0 0
Biogrid 123 0 35 0 19541 14240 19987 544560 3217 4 586 10 0 0
Mips-mpact 44 0 11 0 2552 5117 4463 3217 13494 1 153 5 0 0
Bind 0 0 1 0 3 6 6 4 1 10 1 0 0 0
Pdb 20 0 4 0 499 436 391 586 153 1 755 7 0 0
Pindb 9 0 0 0 42 20 11 10 5 0 7 76 0 0
Cyc2008 0 0 0 0 0 0 0 0 0 0 0 0 408 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Yeastcyc Ptm Intact Dip Mint Biogrid Mips-mpact Bind Pdb Pindb Cyc2008 Wikipathways
Reactome 5879 867 958 0 1567 1410 1505 1565 1148 5 347 121 0 0
Kegg 867 1880 1210 0 798 673 734 801 544 6 64 18 0 0
Yeastcyc 958 1210 4083 0 1217 1068 1147 1217 859 6 167 43 0 0
Ptm 0 0 0 425 0 0 0 200 0 0 0 0 0 0
Intact 1567 798 1217 0 6312 4834 5238 5290 3704 11 711 336 0 0
Dip 1410 673 1068 0 4834 5039 4859 4589 3669 11 691 328 0 0
Mint 1505 734 1147 0 5238 4859 5450 4921 3696 11 691 332 0 0
Biogrid 1565 801 1217 200 5290 4589 4921 11596 3538 11 716 336 0 0
Mips-mpact 1148 544 859 0 3704 3669 3696 3538 5065 2 566 265 0 0
Bind 5 6 6 0 11 11 11 11 2 14 6 0 0 0
Pdb 347 64 167 0 711 691 691 716 566 6 743 117 0 0
Pindb 121 18 43 0 336 328 332 336 265 0 117 412 0 0
Cyc2008 0 0 0 0 0 0 0 0 0 0 0 0 2035 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 134


Number of defined biological pathways in interaction data sources.***
Reactome 840
Kegg 116
Yeastcyc 267
Ptm 0
Intact 0
Dip 0
Mint 0
Biogrid 0
Mips-mpact 0
Bind 0
Pdb 0
Pindb 0
Cyc2008 0
Wikipathways 134



Versions of integrated databases
Reactome 64
Kegg 88.0
Yeastcyc 17.0
Ptm 24.12.2018
Intact 2018-12-01Z
Dip 2017-02-05
Mint 2011-12-02+01:00
Biogrid 3.5.167
Mips-mpact 26.12.2018
Bind 26.12.2018
Pdb 26.12.2018
Pindb 26.12.2018
Cyc2008 26.12.2018
Wikipathways 26.12.2018



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.