ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    23720
interactions:    645741
pathways:    1264


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Yeastcyc Ptm Intact Dip Mint Biogrid Mips-mpact Bind Pdb Pindb Cyc2008 Wikipathways
Reactome 2830 177 91 0 137 88 68 145 47 79 33 13 0 0
Kegg 177 1250 218 0 0 0 0 0 0 0 0 0 0 0
Yeastcyc 91 218 1837 0 66 38 30 92 23 42 11 0 0 0
Ptm 0 0 0 351 0 0 0 0 0 0 0 0 0 0
Intact 137 0 66 0 50072 7642 14649 20128 2570 4356 919 42 0 0
Dip 88 0 38 0 7642 24561 4863 14299 5117 6469 761 20 0 0
Mint 68 0 30 0 14649 4863 18894 15804 1751 2290 716 7 0 0
Biogrid 145 0 92 0 20128 14299 15804 591319 3229 4922 1194 10 0 0
Mips-mpact 47 0 23 0 2570 5117 1751 3229 13494 4366 295 5 0 0
Bind 79 0 42 0 4356 6469 2290 4922 4366 8857 492 5 0 0
Pdb 33 0 11 0 919 761 716 1194 295 492 1637 11 0 0
Pindb 13 0 0 0 42 20 7 10 5 5 11 76 0 0
Cyc2008 0 0 0 0 0 0 0 0 0 0 0 0 408 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Yeastcyc Ptm Intact Dip Mint Biogrid Mips-mpact Bind Pdb Pindb Cyc2008 Wikipathways
Reactome 5494 760 972 0 1817 1616 1606 1798 1328 1466 645 172 0 0
Kegg 760 1866 1208 0 763 637 586 768 511 560 38 3 0 0
Yeastcyc 972 1208 4868 0 1319 1149 1056 1325 928 984 227 43 0 0
Ptm 0 0 0 425 0 0 0 200 0 0 0 0 0 0
Intact 1817 763 1319 0 6321 4835 4504 5322 3704 3942 1128 336 0 0
Dip 1616 637 1149 0 4835 5039 3948 4605 3669 3876 1081 328 0 0
Mint 1606 586 1056 0 4504 3948 4529 4343 3060 3326 1057 327 0 0
Biogrid 1798 768 1325 200 5322 4605 4343 11635 3551 3954 1141 336 0 0
Mips-mpact 1328 511 928 0 3704 3669 3060 3551 5065 3007 870 265 0 0
Bind 1466 560 984 0 3942 3876 3326 3954 3007 4092 970 295 0 0
Pdb 645 38 227 0 1128 1081 1057 1141 870 970 1163 211 0 0
Pindb 172 3 43 0 336 328 327 336 265 295 211 412 0 0
Cyc2008 0 0 0 0 0 0 0 0 0 0 0 0 2035 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of defined biological pathways in interaction data sources.***
Reactome 815
Kegg 117
Yeastcyc 332
Ptm 0
Intact 0
Dip 0
Mint 0
Biogrid 0
Mips-mpact 0
Bind 0
Pdb 0
Pindb 0
Cyc2008 0
Wikipathways 0



Versions of integrated databases
Reactome 76
Kegg 100.0
Yeastcyc 23.0
Ptm 16.10.2021
Intact 2018-12-01Z
Dip 2017-02-05
Mint 16.10.2021
Biogrid 4.4.201
Mips-mpact 17.10.2021
Bind 19.10.2021
Pdb 19.10.2021
Pindb 19.10.2021
Cyc2008 19.10.2021
Wikipathways 19.10.2021



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.