ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    17672
interactions:    272094
pathways:    1101


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Ptm Intact Dip Mint Biogrid Reactome Kegg Yeastcyc Mips-mpact Bind Pdb Pindb Cyc2008 Wikipathways
Ptm 351 4 5 5 15 0 0 0 4 0 0 0 0 0
Intact 4 50690 9996 19657 18202 64 0 28 7019 5 214 42 258 0
Dip 5 9996 24163 13017 13959 37 0 17 7823 6 192 19 162 0
Mint 5 19657 13017 25838 20078 49 0 27 6557 6 187 11 144 0
Biogrid 15 18202 13959 20078 224646 66 0 35 4350 4 252 10 167 0
Reactome 0 64 37 49 66 1381 173 75 37 0 8 3 25 0
Kegg 0 0 0 0 0 173 1104 228 0 0 0 0 0 0
Yeastcyc 0 28 17 27 35 75 228 1440 17 1 4 0 12 0
Mips-mpact 4 7019 7823 6557 4350 37 0 17 13486 5 98 7 160 0
Bind 0 5 6 6 4 0 0 1 5 10 0 0 0 0
Pdb 0 214 192 187 252 8 0 4 98 0 301 4 30 0
Pindb 0 42 19 11 10 3 0 0 7 0 4 76 33 0
Cyc2008 0 258 162 144 167 25 0 12 160 0 30 33 408 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Ptm Intact Dip Mint Biogrid Reactome Kegg Yeastcyc Mips-mpact Bind Pdb Pindb Cyc2008 Wikipathways
Ptm 423 219 195 209 414 34 51 80 191 2 11 2 35 0
Intact 219 6038 4945 5395 5242 971 747 1219 4926 11 323 336 1579 0
Dip 195 4945 5005 4844 4515 855 626 1061 4714 11 317 327 1464 0
Mint 209 5395 4844 5435 4880 923 682 1147 4776 11 318 332 1527 0
Biogrid 414 5242 4515 4880 11289 953 733 1200 4488 11 325 336 1600 0
Reactome 34 971 855 923 953 2971 718 719 889 7 134 66 475 0
Kegg 51 747 626 682 733 718 1788 1164 629 4 29 17 130 0
Yeastcyc 80 1219 1061 1147 1200 719 1164 4083 1053 6 76 43 284 0
Mips-mpact 191 4926 4714 4776 4488 889 629 1053 5043 9 308 323 1534 0
Bind 2 11 11 11 11 7 4 6 9 14 2 0 5 0
Pdb 11 323 317 318 325 134 29 76 308 2 336 50 234 0
Pindb 2 336 327 332 336 66 17 43 323 0 50 412 336 0
Cyc2008 35 1579 1464 1527 1600 475 130 284 1534 5 234 336 2011 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 129


Number of defined biological pathways in interaction data sources.***
Ptm 0
Intact 0
Dip 0
Mint 0
Biogrid 0
Reactome 601
Kegg 104
Yeastcyc 267
Mips-mpact 0
Bind 0
Pdb 0
Pindb 0
Cyc2008 0
Wikipathways 129



Versions of integrated databases
Ptm 26.9.2013
Intact 2008-12-12Z
Dip 2013-07-07
Mint 2011-12-02+01:00
Biogrid 3.2.103
Reactome 45
Kegg 67.0
Yeastcyc 17.0
Mips-mpact 27.9.2013
Bind 27.9.2013
Pdb 27.9.2013
Pindb 27.9.2013
Cyc2008 27.9.2013
Wikipathways 27.9.2013



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.