ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    40873
interactions:    50968
pathways:    2488


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Mousecyc Phosphositeplus Innatedb Dip Intact Mint Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pdzbase Wikipathways
Reactome 14383 432 209 26 62 74 157 41 38 139 4 120 27 1 0 0
Kegg 432 1976 270 0 0 0 0 0 0 0 0 0 0 0 0 0
Mousecyc 209 270 1769 0 1 1 1 1 4 3 0 0 0 0 0 0
Phosphositeplus 26 0 0 614 18 0 0 0 0 0 0 0 0 0 0 0
Innatedb 62 0 1 18 4294 66 213 58 19 716 9 146 15 0 2 0
Dip 74 0 1 0 66 1708 1209 58 28 317 10 110 62 0 1 0
Intact 157 0 1 0 213 1209 6926 1478 83 855 37 435 124 8 31 0
Mint 41 0 1 0 58 58 1478 1654 20 253 14 180 33 2 29 0
Corum 38 0 4 0 19 28 83 20 637 68 4 72 12 0 2 0
Biogrid 139 0 3 0 716 317 855 253 68 19155 40 805 62 0 14 0
Mips-mppi 4 0 0 0 9 10 37 14 4 40 235 91 1 0 2 0
Bind 120 0 0 0 146 110 435 180 72 805 91 3219 44 1 15 0
Pdb 27 0 0 0 15 62 124 33 12 62 1 44 606 2 0 0
Matrixdb 1 0 0 0 0 0 8 2 0 0 0 1 2 76 0 0
Pdzbase 0 0 0 0 2 1 31 29 2 14 2 15 0 0 53 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Mousecyc Phosphositeplus Innatedb Dip Intact Mint Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pdzbase Wikipathways
Reactome 27241 2051 2844 476 1039 914 4077 1178 851 3899 155 1510 347 39 51 0
Kegg 2051 3349 1928 33 60 55 711 90 45 488 3 150 11 4 1 0
Mousecyc 2844 1928 7086 276 245 243 1626 390 288 1281 46 436 124 8 9 0
Phosphositeplus 476 33 276 704 217 242 579 285 195 540 65 344 71 3 13 0
Innatedb 1039 60 245 217 2659 377 1106 454 307 1171 81 623 116 9 15 0
Dip 914 55 243 242 377 1298 1258 467 384 932 87 539 169 5 28 0
Intact 4077 711 1626 579 1106 1258 8156 1910 937 4325 180 1528 416 25 66 0
Mint 1178 90 390 285 454 467 1910 2013 455 1332 108 670 179 12 53 0
Corum 851 45 288 195 307 384 937 455 1813 869 111 517 164 3 32 0
Biogrid 3899 488 1281 540 1171 932 4325 1332 869 7408 173 1659 325 24 55 0
Mips-mppi 155 3 46 65 81 87 180 108 111 173 224 158 32 2 7 0
Bind 1510 150 436 344 623 539 1528 670 517 1659 158 2672 198 18 54 0
Pdb 347 11 124 71 116 169 416 179 164 325 32 198 559 4 7 0
Matrixdb 39 4 8 3 9 5 25 12 3 24 2 18 4 63 0 0
Pdzbase 51 1 9 13 15 28 66 53 32 55 7 54 7 0 70 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 224


Number of defined biological pathways in interaction data sources.***
Reactome 1617
Kegg 322
Mousecyc 325
Phosphositeplus 0
Innatedb 0
Dip 0
Intact 0
Mint 0
Corum 0
Biogrid 0
Mips-mppi 0
Bind 0
Pdb 0
Matrixdb 0
Pdzbase 0
Wikipathways 224



Versions of integrated databases
Reactome 64
Kegg 88.0
Mousecyc 1.7
Phosphositeplus 25.12.2018
Innatedb 25.12.2018
Dip 2017-02-05
Intact 2018-12-01Z
Mint 2011-12-02+01:00
Corum 25.12.2018
Biogrid 3.5.167
Mips-mppi 25.12.2018
Bind 25.12.2018
Pdb 25.12.2018
Matrixdb 20120801
Pdzbase 25.12.2018
Wikipathways 25.12.2018



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.