ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    31679
interactions:    34064
pathways:    2173


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Mousecyc Phosphositeplus Innatedb Intact Dip Mint Biogrid Mips-mppi Bind Pdb Matrixdb Pdzbase Wikipathways
Reactome 9807 392 186 19 51 84 43 27 65 3 75 15 1 0 0
Kegg 392 1869 275 0 0 0 0 0 0 0 0 0 0 0 0
Mousecyc 186 275 1769 0 1 2 0 1 2 0 0 2 0 0 0
Phosphositeplus 19 0 0 511 15 0 0 0 0 0 0 0 0 0 0
Innatedb 51 0 1 15 3073 151 56 56 292 9 146 12 0 0 0
Intact 84 0 2 0 151 4553 112 1503 561 24 363 63 1 0 0
Dip 43 0 0 0 56 112 1001 46 189 9 80 34 0 0 0
Mint 27 0 1 0 56 1503 46 1655 228 14 181 31 1 0 0
Biogrid 65 0 2 0 292 561 189 228 10016 34 715 38 0 0 0
Mips-mppi 3 0 0 0 9 24 9 14 34 235 90 0 0 0 0
Bind 75 0 0 0 146 363 80 181 715 90 3219 39 1 0 0
Pdb 15 0 2 0 12 63 34 31 38 0 39 297 1 0 0
Matrixdb 1 0 0 0 0 1 0 1 0 0 1 1 49 0 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Mousecyc Phosphositeplus Innatedb Intact Dip Mint Biogrid Mips-mppi Bind Pdb Matrixdb Pdzbase Wikipathways
Reactome 19122 1733 2324 323 581 2447 477 932 1875 142 1163 188 25 0 0
Kegg 1733 3235 1838 26 27 604 35 85 226 3 147 8 2 0 0
Mousecyc 2324 1838 7087 225 184 1368 158 388 740 46 428 65 7 0 0
Phosphositeplus 323 26 225 583 159 424 149 250 369 55 292 44 2 0 0
Innatedb 581 27 184 159 1839 659 219 352 672 76 521 69 5 0 0
Intact 2447 604 1368 424 659 6255 614 1913 2476 171 1319 257 15 0 0
Dip 477 35 158 149 219 614 866 333 550 71 379 103 0 0 0
Mint 932 85 388 250 352 1913 333 2013 1070 108 664 144 8 0 0
Biogrid 1875 226 740 369 672 2476 550 1070 4730 154 1462 190 11 0 0
Mips-mppi 142 3 46 55 76 171 71 108 154 224 157 27 0 0 0
Bind 1163 147 428 292 521 1319 379 664 1462 157 2673 149 12 0 0
Pdb 188 8 65 44 69 257 103 144 190 27 149 362 2 0 0
Matrixdb 25 2 7 2 5 15 0 8 11 0 12 2 46 0 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187


Number of defined biological pathways in interaction data sources.***
Reactome 1388
Kegg 273
Mousecyc 325
Phosphositeplus 0
Innatedb 0
Intact 0
Dip 0
Mint 0
Biogrid 0
Mips-mppi 0
Bind 0
Pdb 0
Matrixdb 0
Pdzbase 0
Wikipathways 187



Versions of integrated databases
Reactome 46
Kegg 68.0
Mousecyc 1.7
Phosphositeplus 9.10.2013
Innatedb 9.10.2013
Intact 2013-09-02+01:00
Dip 2013-07-07
Mint 2011-12-02+01:00
Biogrid 3.2.105
Mips-mppi 9.10.2013
Bind 9.10.2013
Pdb 9.10.2013
Matrixdb 20120801
Pdzbase 9.10.2013
Wikipathways 9.10.2013



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.