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ConsensusPathDB-human integrates interaction networks in Homo sapiens including binary and complex protein-protein, genetic, metabolic, signaling, gene regulatory and drug-target interactions, as well as biochemical pathways. Data originate from currently 31 public resources for interactions (listed below) and interactions that we have curated from the literature. The interaction data are integrated in a complementary manner (avoiding redundancies), resulting in a seamless interaction network containing different types of interactions.
Kamburov, A. et al. (2013) The ConsensusPathDB interaction database: 2013 update. Nucleic Acids Res.
Kamburov, A. et al. (2011) ConsensusPathDB: toward a more complete picture of cell biology. Nucleic Acids Res. Kamburov, A. et al. (2009) ConsensusPathDB--a database for integrating human interaction networks. Nucleic Acids Res. Pentchev, K. et al. (2010) Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape. Bioinformatics A poster about ConsensusPathDB is available here. |
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Integrated databases: | |||||||||
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| name | protein interactions |
signaling reactions |
metabolic reactions |
gene regulations |
genetic interactions |
drug-target interactions |
biochemical pathways |
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Reactome | ![]() |
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Kegg | ![]() |
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Humancyc | ![]() |
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Pid | ![]() |
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Biocarta | ![]() |
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Netpath | ![]() |
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Inoh | ![]() |
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Ehmn | ![]() |
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Phosphositeplus | ![]() |
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Innatedb | ![]() |
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Intact | ![]() |
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Dip | ![]() |
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Mint | ![]() |
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Hprd | ![]() |
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Corum | ![]() |
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Biogrid | ![]() |
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Mips-mppi | ![]() |
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Bind | ![]() |
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Matrixdb | ![]() |
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Pindb | ![]() |
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Spike | ![]() |
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Pig | ![]() |
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Phosphopoint | ![]() |
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Pdzbase | ![]() |
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Pharmgkb | ![]() |
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Smpdb | ![]() |
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Signalink | ![]() |
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Drugbank | ![]() |
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Ttd | ![]() |
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Wikipathways | ![]() |
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Chembl | ![]() |
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ConsensusPathDB | ![]() |
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