ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    170276
interactions:    603543
pathways:    5359


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Drugbank Ttd Chembl
Reactome 17995 459 451 497 158 150 282 487 88 213 846 401 230 1007 210 916 14 478 206 7 27 490 0 200 2 0 0 0
Kegg 459 6539 278 0 4 0 372 1074 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 172
Humancyc 451 278 2937 6 10 1 128 325 0 11 126 37 31 152 14 133 0 79 6 0 0 35 0 4 0 0 0 0
Pid 497 0 6 7719 318 356 113 3 403 261 405 245 145 668 150 585 20 274 138 5 5 686 0 463 7 0 0 0
Biocarta 158 4 10 318 2323 171 54 10 213 120 112 74 48 153 48 144 8 81 51 0 2 307 0 211 0 0 0 0
Netpath 150 0 1 356 171 2839 79 0 429 433 676 331 435 1467 62 1211 20 310 103 2 2 1572 0 872 0 0 0 0
Inoh 282 372 128 113 54 79 1898 387 35 51 77 48 34 95 24 78 1 60 17 0 0 98 0 61 0 0 0 0
Ehmn 487 1074 325 3 10 0 387 3893 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
Phosphositeplus 88 0 0 403 213 429 35 0 2299 228 0 0 0 0 0 0 0 0 0 0 0 824 0 784 0 0 0 0
Innatedb 213 0 11 261 120 433 51 0 228 12905 2337 467 676 2209 95 6116 31 647 222 9 2 1551 0 931 7 0 0 0
Intact 846 0 126 405 112 676 77 0 0 2337 111092 4701 16142 14226 499 46959 122 3414 1285 65 36 22129 0 2723 53 0 0 0
Dip 401 0 37 245 74 331 48 0 0 467 4701 6463 744 1973 218 3250 53 726 721 11 11 1297 0 460 3 0 0 0
Mint 230 0 31 145 48 435 34 0 0 676 16142 744 18057 8392 144 12167 60 1749 407 5 7 11379 0 1703 54 0 0 0
Hprd 1007 0 152 668 153 1467 95 0 0 2209 14226 1973 8392 40485 677 24783 283 5935 1073 47 29 16655 0 7110 93 0 0 0
Corum 210 0 14 150 48 62 24 0 0 95 499 218 144 677 2186 467 13 270 140 1 76 285 0 70 1 0 0 0
Biogrid 916 0 133 585 144 1211 78 0 0 6116 46959 3250 12167 24783 467 275148 237 5116 1575 49 19 20160 0 4356 66 0 0 0
Mips-mppi 14 0 0 20 8 20 1 0 0 31 122 53 60 283 13 237 323 270 38 2 0 151 0 40 3 0 0 0
Bind 478 0 79 274 81 310 60 0 0 647 3414 726 1749 5935 270 5116 270 18773 479 10 6 3393 0 1366 20 0 0 0
Pdb 206 0 6 138 51 103 17 0 0 222 1285 721 407 1073 140 1575 38 479 2828 7 8 748 0 169 6 0 0 0
Matrixdb 7 0 0 5 0 2 0 0 0 9 65 11 5 47 1 49 2 10 7 537 0 18 0 4 0 0 0 0
Pindb 27 0 0 5 2 2 0 0 0 2 36 11 7 29 76 19 0 6 8 0 207 21 0 4 0 0 0 0
Spike 490 0 35 686 307 1572 98 1 824 1551 22129 1297 11379 16655 285 20160 151 3393 748 18 21 38742 0 3562 60 0 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20089 0 0 0 0 0
Phosphopoint 200 0 4 463 211 872 61 0 784 931 2723 460 1703 7110 70 4356 40 1366 169 4 4 3562 0 10048 20 0 0 0
Pdzbase 2 0 0 7 0 0 0 0 0 7 53 3 54 93 1 66 3 20 6 0 0 60 0 20 101 0 0 0
Drugbank 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13258 0 0
Ttd 0 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3225 217
Chembl 0 172 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 217 143255


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Drugbank Ttd Chembl Wikipathways
Reactome 27534 2369 3616 2529 1387 1172 1232 2226 1830 3110 8528 2696 4488 6605 2795 9036 349 5242 2025 216 556 6117 2712 2380 91 182 0 373 664 1178 0
Kegg 2369 4424 2112 280 229 104 1054 2022 204 355 1366 249 583 957 206 1569 25 946 153 16 36 877 370 238 10 343 0 588 501 517 0
Humancyc 3616 2112 8588 680 490 358 1008 2163 735 917 2774 692 1370 2062 608 3080 84 1859 545 56 94 1934 741 845 33 117 0 295 305 842 0
Pid 2529 280 680 6950 1056 885 395 373 1086 1464 2565 1327 1685 2350 1156 2773 262 2133 961 135 201 2599 1053 1398 50 35 0 52 266 524 0
Biocarta 1387 229 490 1056 2884 532 310 281 622 863 1348 797 972 1309 699 1417 186 1151 584 72 134 1325 681 822 23 51 0 78 227 406 0
Netpath 1172 104 358 885 532 1611 243 201 686 860 1339 806 1083 1299 706 1352 185 1067 563 50 115 1299 689 909 29 5 0 6 134 302 0
Inoh 1232 1054 1008 395 310 243 2314 838 247 340 752 295 436 624 236 804 60 642 206 21 11 611 292 297 8 66 0 179 147 230 0
Ehmn 2226 2022 2163 373 281 201 838 4379 363 478 1377 346 704 1047 349 1562 41 1011 290 23 55 971 404 426 18 111 0 291 204 426 0
Phosphositeplus 1830 204 735 1086 622 686 247 363 2391 1311 2308 1202 1714 2127 1005 2347 228 1694 807 59 223 2078 999 1438 46 1 0 1 204 535 0
Innatedb 3110 355 917 1464 863 860 340 478 1311 5681 4347 1723 2882 3602 1598 4642 262 3204 1174 120 346 3710 1697 1699 51 5 0 8 246 515 0
Intact 8528 1366 2774 2565 1348 1339 752 1377 2308 4347 18604 3217 6756 9021 3108 14094 385 7056 2328 215 648 8933 3805 3058 113 30 0 36 483 1088 0
Dip 2696 249 692 1327 797 806 295 346 1202 1723 3217 3274 2267 2874 1598 3180 275 2345 1427 114 415 2790 1434 1427 42 20 0 23 274 476 0
Mint 4488 583 1370 1685 972 1083 436 704 1714 2882 6756 2267 7179 5776 2269 6522 323 4180 1644 138 498 5872 2423 2335 102 14 0 18 271 656 0
Hprd 6605 957 2062 2350 1309 1299 624 1047 2127 3602 9021 2874 5776 9846 2745 9532 384 5672 2076 216 597 7744 3032 3092 115 29 0 35 496 1056 0
Corum 2795 206 608 1156 699 706 236 349 1005 1598 3108 1598 2269 2745 5374 3134 254 2323 1117 87 589 2757 1316 1285 44 6 0 7 171 357 0
Biogrid 9036 1569 3080 2773 1417 1352 804 1562 2347 4642 14094 3180 6522 9532 3134 22042 385 9149 2314 221 655 9394 3858 3134 115 29 0 35 523 1152 0
Mips-mppi 349 25 84 262 186 185 60 41 228 262 385 275 323 384 254 385 400 382 186 22 54 375 228 277 15 2 0 2 52 100 0
Bind 5242 946 1859 2133 1151 1067 642 1011 1694 3204 7056 2345 4180 5672 2323 9149 382 12757 1734 172 499 5899 2476 2300 82 95 0 186 427 840 0
Pdb 2025 153 545 961 584 563 206 290 807 1174 2328 1427 1644 2076 1117 2314 186 1734 2506 93 258 2002 971 1001 41 18 0 20 201 362 0
Matrixdb 216 16 56 135 72 50 21 23 59 120 215 114 138 216 87 221 22 172 93 278 13 200 112 94 5 6 0 8 46 60 0
Pindb 556 36 94 201 134 115 11 55 223 346 648 415 498 597 589 655 54 499 258 13 862 606 327 248 1 0 0 0 14 44 0
Spike 6117 877 1934 2599 1325 1299 611 971 2078 3710 8933 2790 5872 7744 2757 9394 375 5899 2002 200 606 10914 3005 2836 110 31 0 38 401 897 0
Pig 2712 370 741 1053 681 689 292 404 999 1697 3805 1434 2423 3032 1316 3858 228 2476 971 112 327 3005 7569 1271 43 10 0 11 178 376 0
Phosphopoint 2380 238 845 1398 822 909 297 426 1438 1699 3058 1427 2335 3092 1285 3134 277 2300 1001 94 248 2836 1271 3189 74 7 0 9 249 613 0
Pdzbase 91 10 33 50 23 29 8 18 46 51 113 42 102 115 44 115 15 82 41 5 1 110 43 74 115 0 0 0 15 24 0
Pharmgkb 182 343 117 35 51 5 66 111 1 5 30 20 14 29 6 29 2 95 18 6 0 31 10 7 0 1575 0 1462 1039 356 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 724 0 0 0 0
Drugbank 373 588 295 52 78 6 179 291 1 8 36 23 18 35 7 35 2 186 20 8 0 38 11 9 0 1462 0 8119 1215 533 0
Ttd 664 501 305 266 227 134 147 204 204 246 483 274 271 496 171 523 52 427 201 46 14 401 178 249 15 1039 0 1215 3531 794 0
Chembl 1178 517 842 524 406 302 230 426 535 515 1088 476 656 1056 357 1152 100 840 362 60 44 897 376 613 24 356 0 533 794 93717 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 960


Number of defined biological pathways in interaction data sources.***
Reactome 2216
Kegg 323
Humancyc 331
Pid 226
Biocarta 254
Netpath 35
Inoh 93
Ehmn 69
Pharmgkb 113
Smpdb 724
Signalink 15
Wikipathways 960



Versions of integrated databases
Reactome 64
Kegg 86.0
Humancyc 19.1
Pid 2014_02_14
Biocarta 2009_05_12
Netpath 31.3.2018
Inoh 31.3.2018
Ehmn 31.3.2018
Phosphositeplus 31.3.2018
Innatedb 31.3.2018
Intact 2013-09-02+01:00
Dip 2017-02-05
Mint 2011-12-02+01:00
Hprd I_041210
Corum 4.4.2018
Biogrid 3.4.159
Mips-mppi 5.4.2018
Bind 5.4.2018
Pdb 5.4.2018
Matrixdb 20120801
Pindb 5.4.2018
Spike 5.4.2018
Pig 7.4.2018
Phosphopoint 7.4.2018
Pdzbase 7.4.2018
Pharmgkb 7.4.2018
Smpdb 7.4.2018
Signalink 7.4.2018
Drugbank 9.4.2018
Ttd 9.4.2018
Chembl 9.4.2018
Wikipathways 9.4.2018



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.