ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    172559
interactions:    660318
pathways:    5436


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Drugbank Ttd Chembl
Reactome 17995 460 459 497 158 150 282 487 88 213 861 401 230 1007 240 926 14 478 217 8 27 490 0 200 2 0 0 0
Kegg 460 7481 282 0 4 0 373 1066 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 209
Humancyc 459 282 2887 6 10 1 133 333 0 11 129 37 31 155 27 137 0 81 8 0 0 35 0 4 0 0 0 0
Pid 497 0 6 7719 318 356 113 3 406 261 406 245 145 668 158 593 20 274 140 6 5 686 0 463 7 0 0 0
Biocarta 158 4 10 318 2323 171 54 10 215 120 110 74 48 153 50 145 8 81 53 0 2 307 0 211 0 0 0 0
Netpath 150 0 1 356 171 2839 79 0 434 433 677 331 435 1467 65 1219 20 310 105 2 2 1572 0 872 0 0 0 0
Inoh 282 373 133 113 54 79 1898 387 35 51 77 48 34 95 25 78 1 60 18 0 0 98 0 61 0 0 0 0
Ehmn 487 1066 333 3 10 0 387 3893 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
Phosphositeplus 88 0 0 406 215 434 35 0 2360 229 0 0 0 0 0 0 0 0 0 0 0 833 0 785 0 0 0 0
Innatedb 213 0 11 261 120 433 51 0 229 12905 2360 467 676 2209 111 6149 31 647 224 8 2 1551 0 931 7 0 0 0
Intact 861 0 129 406 110 677 77 0 0 2360 132757 4674 15889 14249 596 47960 122 3431 1345 67 36 22017 0 2679 52 0 0 0
Dip 401 0 37 245 74 331 48 0 0 467 4674 6463 744 1973 248 3309 53 726 736 10 11 1297 0 460 3 0 0 0
Mint 230 0 31 145 48 435 34 0 0 676 15889 744 18057 8392 153 12190 60 1749 417 4 7 11379 0 1703 54 0 0 0
Hprd 1007 0 155 668 153 1467 95 0 0 2209 14249 1973 8392 40485 740 24891 283 5935 1114 47 29 16656 0 7110 93 0 0 0
Corum 240 0 27 158 50 65 25 0 0 111 596 248 153 740 2725 559 16 283 172 1 80 320 0 74 1 0 0 0
Biogrid 926 0 137 593 145 1219 78 0 0 6149 47960 3309 12190 24891 559 308847 237 5147 1669 44 19 20224 0 4400 66 0 0 0
Mips-mppi 14 0 0 20 8 20 1 0 0 31 122 53 60 283 16 237 323 270 39 2 0 151 0 40 3 0 0 0
Bind 478 0 81 274 81 310 60 0 0 647 3431 726 1749 5935 283 5147 270 18773 493 12 6 3393 0 1366 20 0 0 0
Pdb 217 0 8 140 53 105 18 0 0 224 1345 736 417 1114 172 1669 39 493 3011 7 8 772 0 173 6 0 0 0
Matrixdb 8 0 0 6 0 2 0 0 0 8 67 10 4 47 1 44 2 12 7 523 0 18 0 4 0 0 0 0
Pindb 27 0 0 5 2 2 0 0 0 2 36 11 7 29 80 19 0 6 8 0 207 21 0 4 0 0 0 0
Spike 490 0 35 686 307 1572 98 1 833 1551 22017 1297 11379 16656 320 20224 151 3393 772 18 21 38743 0 3562 60 0 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20089 0 0 0 0 0
Phosphopoint 200 0 4 463 211 872 61 0 785 931 2679 460 1703 7110 74 4400 40 1366 173 4 4 3562 0 10048 20 0 0 0
Pdzbase 2 0 0 7 0 0 0 0 0 7 52 3 54 93 1 66 3 20 6 0 0 60 0 20 101 0 0 0
Drugbank 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14417 0 0
Ttd 0 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3225 217
Chembl 0 209 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 217 143255


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Drugbank Ttd Chembl Wikipathways
Reactome 27534 2412 3635 2529 1387 1172 1232 2226 1880 3110 8906 2696 4488 6605 3146 9079 349 5242 2110 213 556 6117 2712 2380 91 182 0 378 664 1178 0
Kegg 2412 4776 2145 296 245 111 1057 2024 229 368 1477 263 603 992 274 1616 31 974 178 19 37 908 375 261 10 414 0 698 591 567 0
Humancyc 3635 2145 8390 682 494 359 1012 2174 755 918 2902 692 1372 2068 710 3104 84 1861 572 57 95 1939 744 847 33 117 0 297 305 843 0
Pid 2529 296 682 6950 1056 885 395 373 1096 1464 2588 1327 1685 2350 1282 2822 262 2133 992 130 201 2599 1053 1398 50 35 0 53 266 524 0
Biocarta 1387 245 494 1056 2884 532 310 281 629 863 1363 797 972 1309 757 1426 186 1151 603 66 134 1325 681 822 23 51 0 78 227 406 0
Netpath 1172 111 359 885 532 1611 243 201 695 860 1337 806 1083 1299 764 1352 185 1067 578 46 115 1299 689 909 29 5 0 6 134 302 0
Inoh 1232 1057 1012 395 310 243 2314 838 251 340 767 295 436 624 268 804 60 642 218 22 11 611 292 297 8 66 0 179 147 230 0
Ehmn 2226 2024 2174 373 281 201 838 4379 370 478 1442 346 704 1047 398 1569 41 1011 301 27 55 971 404 426 18 111 0 294 204 426 0
Phosphositeplus 1880 229 755 1096 629 695 251 370 2454 1336 2383 1222 1752 2179 1136 2414 230 1727 856 54 224 2127 1019 1453 48 1 0 1 206 542 0
Innatedb 3110 368 918 1464 863 860 340 478 1336 5681 4381 1723 2882 3602 1775 4722 262 3204 1217 113 346 3710 1697 1699 51 5 0 8 246 515 0
Intact 8906 1477 2902 2588 1363 1337 767 1442 2383 4381 19902 3219 6721 9179 3555 14725 384 7180 2438 208 649 8996 3843 3074 113 30 0 36 502 1116 0
Dip 2696 263 692 1327 797 806 295 346 1222 1723 3219 3274 2267 2874 1757 3183 275 2345 1468 104 415 2790 1434 1427 42 20 0 23 274 476 0
Mint 4488 603 1372 1685 972 1083 436 704 1752 2882 6721 2267 7179 5776 2501 6526 323 4180 1712 128 498 5872 2423 2335 102 14 0 18 271 656 0
Hprd 6605 992 2068 2350 1309 1299 624 1047 2179 3602 9179 2874 5776 9846 3091 9546 384 5672 2166 206 597 7744 3032 3092 115 29 0 35 496 1056 0
Corum 3146 274 710 1282 757 764 268 398 1136 1775 3555 1757 2501 3091 6374 3578 268 2560 1293 94 601 3076 1459 1418 53 9 0 11 199 405 0
Biogrid 9079 1616 3104 2822 1426 1352 804 1569 2414 4722 14725 3183 6526 9546 3578 23512 385 9578 2423 212 655 9479 3863 3135 115 29 0 35 523 1152 0
Mips-mppi 349 31 84 262 186 185 60 41 230 262 384 275 323 384 268 385 400 382 193 18 54 375 228 277 15 2 0 2 52 100 0
Bind 5242 974 1861 2133 1151 1067 642 1011 1727 3204 7180 2345 4180 5672 2560 9578 382 12757 1797 165 499 5899 2476 2300 82 95 0 187 427 840 0
Pdb 2110 178 572 992 603 578 218 301 856 1217 2438 1468 1712 2166 1293 2423 193 1797 2643 88 267 2086 1000 1040 43 18 0 20 204 376 0
Matrixdb 213 19 57 130 66 46 22 27 54 113 208 104 128 206 94 212 18 165 88 265 4 191 109 89 4 9 0 11 43 56 0
Pindb 556 37 95 201 134 115 11 55 224 346 649 415 498 597 601 655 54 499 267 4 862 606 327 248 1 0 0 0 14 44 0
Spike 6117 908 1939 2599 1325 1299 611 971 2127 3710 8996 2790 5872 7744 3076 9479 375 5899 2086 191 606 10914 3005 2836 110 31 0 38 401 897 0
Pig 2712 375 744 1053 681 689 292 404 1019 1697 3843 1434 2423 3032 1459 3863 228 2476 1000 109 327 3005 7569 1271 43 10 0 11 178 376 0
Phosphopoint 2380 261 847 1398 822 909 297 426 1453 1699 3074 1427 2335 3092 1418 3135 277 2300 1040 89 248 2836 1271 3189 74 7 0 9 249 613 0
Pdzbase 91 10 33 50 23 29 8 18 48 51 113 42 102 115 53 115 15 82 43 4 1 110 43 74 115 0 0 0 15 24 0
Pharmgkb 182 414 117 35 51 5 66 111 1 5 30 20 14 29 9 29 2 95 18 9 0 31 10 7 0 1583 0 1470 1044 358 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 724 0 0 0 0
Drugbank 378 698 297 53 78 6 179 294 1 8 36 23 18 35 11 35 2 187 20 11 0 38 11 9 0 1470 0 8524 1226 540 0
Ttd 664 591 305 266 227 134 147 204 206 246 502 274 271 496 199 523 52 427 204 43 14 401 178 249 15 1044 0 1226 3531 794 0
Chembl 1178 567 843 524 406 302 230 426 542 515 1116 476 656 1056 405 1152 100 840 376 56 44 897 376 613 24 358 0 540 794 93717 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1040


Number of defined biological pathways in interaction data sources.***
Reactome 2216
Kegg 326
Humancyc 325
Pid 226
Biocarta 254
Netpath 35
Inoh 93
Ehmn 69
Pharmgkb 113
Smpdb 724
Signalink 15
Wikipathways 1040



Versions of integrated databases
Reactome 64
Kegg 88.0
Humancyc 13.6
Pid 2014_02_14
Biocarta 2009_05_12
Netpath 24.12.2018
Inoh 24.12.2018
Ehmn 24.12.2018
Phosphositeplus 24.12.2018
Innatedb 24.12.2018
Intact 2018-12-01Z
Dip 2017-02-05
Mint 2011-12-02+01:00
Hprd I_041210
Corum 25.12.2018
Biogrid 3.5.167
Mips-mppi 26.12.2018
Bind 26.12.2018
Pdb 26.12.2018
Matrixdb 20120801
Pindb 26.12.2018
Spike 26.12.2018
Pig 28.12.2018
Phosphopoint 28.12.2018
Pdzbase 29.12.2018
Pharmgkb 29.12.2018
Smpdb 29.12.2018
Signalink 29.12.2018
Drugbank 29.12.2018
Ttd 29.12.2018
Chembl 29.12.2018
Wikipathways 29.12.2018



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.