ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    56674
interactions:    210281
pathways:    3337


Overlap statistics

Number of nonredundant* interactions shared by databases. The numbers in the blue diagonal correspond to the number of nonredundant interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact-ss Intact-ls Dip Mint Hprd Corum Biogrid Mips-mppi Bind Matrixdb Pin Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Wikipathways
Reactome 8128 314 278 356 100 93 224 382 51 102 28 25 148 121 565 126 327 9 221 3 17 292 0 120 0 0 0 0 2 0 0
Kegg 314 8575 285 0 4 0 357 1076 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 365 0 0 1311 506 0
Humancyc 278 285 2209 6 9 1 142 332 0 9 2 10 14 13 85 11 40 0 39 0 0 22 0 1 0 0 0 0 0 0 0
Pid 356 0 6 7738 315 317 113 3 368 261 29 17 181 137 673 135 477 19 229 2 5 686 0 463 7 0 0 0 0 0 0
Biocarta 100 4 9 315 2323 155 54 10 195 116 13 7 57 48 153 43 129 7 64 0 2 307 0 211 0 0 0 0 0 0 0
Netpath 93 0 1 317 155 2567 74 0 322 406 21 12 270 406 1388 54 982 20 245 1 2 1514 0 810 0 0 0 0 0 0 0
Inoh 224 357 142 113 54 74 1898 387 32 51 7 4 35 32 95 24 73 1 44 0 0 98 0 61 0 0 0 0 0 0 0
Ehmn 382 1076 332 3 10 0 387 3893 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
Phosphositeplus 51 0 0 368 195 322 32 0 1654 194 0 0 0 0 0 0 0 0 0 0 0 690 0 737 0 0 0 0 0 0 0
Innatedb 102 0 9 261 116 406 51 0 194 8093 57 162 272 572 2023 66 1875 32 493 3 1 1385 0 916 6 0 0 0 0 0 0
Intact-ss 28 0 2 29 13 21 7 0 0 57 2872 25 75 103 415 38 428 7 121 0 3 415 0 55 0 0 0 0 0 0 0
Intact-ls 25 0 10 17 7 12 4 0 0 162 25 12213 56 3982 5398 16 6650 12 131 0 0 9803 0 234 0 0 0 0 0 0 0
Dip 148 0 14 181 57 270 35 0 0 272 75 56 2978 510 1374 111 1387 39 457 3 3 916 0 356 3 0 0 0 1 0 0
Mint 121 0 13 137 48 406 32 0 0 572 103 3982 510 14977 7877 114 6148 58 1215 2 6 11729 0 1641 53 0 0 0 0 0 0
Hprd 565 0 85 673 153 1388 95 0 0 2023 415 5398 1374 7877 40482 601 19785 280 4969 32 29 16664 0 7110 93 0 0 0 2 0 0
Corum 126 0 11 135 43 54 24 0 0 66 38 16 111 114 601 1682 301 9 232 0 70 242 0 66 0 0 0 0 0 0 0
Biogrid 327 0 40 477 129 982 73 0 0 1875 428 6650 1387 6148 19785 301 59492 207 2890 19 18 16041 0 3193 62 0 0 0 0 0 0
Mips-mppi 9 0 0 19 7 20 1 0 0 32 7 12 39 58 280 9 207 323 162 2 0 152 0 39 3 0 0 0 0 0 0
Bind 221 0 39 229 64 245 44 0 0 493 121 131 457 1215 4969 232 2890 162 20899 4 6 2707 0 1203 16 0 0 0 0 0 0
Matrixdb 3 0 0 2 0 1 0 0 0 3 0 0 3 2 32 0 19 2 4 294 0 11 0 1 0 0 0 0 0 0 0
Pin 17 0 0 5 2 2 0 0 0 1 3 0 3 6 29 70 18 0 6 0 207 21 0 4 0 0 0 0 0 0 0
Spike 292 0 22 686 307 1514 98 1 690 1385 415 9803 916 11729 16664 242 16041 152 2707 11 21 38739 0 3579 60 0 0 0 1 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20096 0 0 0 0 0 0 0 0
Phosphopoint 120 0 1 463 211 810 61 0 737 916 55 234 356 1641 7110 66 3193 39 1203 1 4 3579 0 10029 20 0 0 0 0 0 0
Pdzbase 0 0 0 7 0 0 0 0 0 6 0 0 3 53 93 0 62 3 16 0 0 60 0 20 101 0 0 0 0 0 0
Pharmgkb 0 365 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15738 0 0 617 154 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 2 1311 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 617 0 0 13751 548 0
Ttd 0 506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 154 0 0 548 3257 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of nonredundant** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of nonredundant physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact-ss Intact-ls Dip Mint Hprd Corum Biogrid Mips-mppi Bind Matrixdb Pin Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Wikipathways
Reactome 14385 1809 2251 1780 1076 777 1027 1663 992 1291 1222 1572 1220 2491 3969 1571 4204 272 3002 91 303 3580 1653 1650 56 1812 0 0 1743 535 0
Kegg 1809 5844 2026 339 293 113 1060 2058 240 255 341 454 205 613 1129 220 1309 48 874 22 41 1023 398 330 19 1218 0 0 1859 1156 0
Humancyc 2251 2026 7089 670 486 328 993 2088 590 563 592 845 411 1164 1994 478 2381 82 1564 38 90 1858 698 829 33 1086 0 0 1470 295 0
Pid 1780 339 670 6965 1059 824 395 371 902 1216 798 843 966 1583 2347 1011 2399 259 1746 85 201 2601 1050 1399 50 1032 0 0 640 266 0
Biocarta 1076 293 486 1059 2884 498 310 281 544 709 523 483 607 920 1310 644 1308 185 1033 44 134 1325 683 822 23 858 0 0 533 229 0
Netpath 777 113 328 824 498 1469 237 184 530 692 480 486 560 955 1201 600 1217 171 965 25 114 1211 648 848 25 472 0 0 271 107 0
Inoh 1027 1060 993 395 310 237 2314 838 205 250 232 268 207 412 626 214 696 60 524 14 11 612 292 297 8 532 0 0 638 147 0
Ehmn 1663 2058 2088 371 281 184 838 4379 296 285 327 432 218 623 1047 293 1239 41 837 17 55 971 396 425 18 677 0 0 959 204 0
Phosphositeplus 992 240 590 902 544 530 205 296 1739 783 617 683 660 1234 1601 673 1642 195 1232 29 170 1556 743 1192 37 656 0 0 439 184 0
Innatedb 1291 255 563 1216 709 692 250 285 783 3627 789 1056 848 1691 2310 912 2432 225 1769 67 215 2378 1133 1259 48 775 0 0 515 212 0
Intact-ss 1222 341 592 798 523 480 232 327 617 789 2570 1014 709 1521 2029 886 2237 194 1639 28 276 2015 953 986 28 636 0 0 464 137 0
Intact-ls 1572 454 845 843 483 486 268 432 683 1056 1014 4619 788 3251 3718 1128 4038 159 2456 33 306 4001 1497 1291 36 706 0 0 611 90 0
Dip 1220 205 411 966 607 560 207 218 660 848 709 788 1993 1399 1848 981 1867 222 1516 56 303 1760 953 997 23 683 0 0 462 205 0
Mint 2491 613 1164 1583 920 955 412 623 1234 1691 1521 3251 1399 6558 5332 1835 5535 310 3668 79 467 5545 2235 2211 102 1228 0 0 949 256 0
Hprd 3969 1129 1994 2347 1310 1201 626 1047 1601 2310 2029 3718 1848 5332 9843 2274 8714 380 5428 141 596 7747 3024 3091 115 2038 0 0 1628 495 0
Corum 1571 220 478 1011 644 600 214 293 673 912 886 1128 981 1835 2274 4226 2445 227 1940 48 554 2297 1139 1129 27 646 0 0 440 133 0
Biogrid 4204 1309 2381 2399 1308 1217 696 1239 1642 2432 2237 4038 1867 5535 8714 2445 12773 380 6176 133 648 8411 3486 3016 110 2077 0 0 1702 451 0
Mips-mppi 272 48 82 259 185 171 60 41 195 225 194 159 222 310 380 227 380 400 363 13 55 372 227 274 15 184 0 0 110 52 0
Bind 3002 874 1564 1746 1033 965 524 837 1232 1769 1639 2456 1516 3668 5428 1940 6176 363 9837 112 488 5210 2405 2212 78 1549 0 0 1291 345 0
Matrixdb 91 22 38 85 44 25 14 17 29 67 28 33 56 79 141 48 133 13 112 195 2 131 71 58 3 60 0 0 65 29 0
Pin 303 41 90 201 134 114 11 55 170 215 276 306 303 467 596 554 648 55 488 2 862 606 325 249 1 118 0 0 49 14 0
Spike 3580 1023 1858 2601 1325 1211 612 971 1556 2378 2015 4001 1760 5545 7747 2297 8411 372 5210 131 606 10914 2993 2836 110 1789 0 0 1433 401 0
Pig 1653 398 698 1050 683 648 292 396 743 1133 953 1497 953 2235 3024 1139 3486 227 2405 71 325 2993 7577 1270 43 886 0 0 625 178 0
Phosphopoint 1650 330 829 1399 822 848 297 425 1192 1259 986 1291 997 2211 3091 1129 3016 274 2212 58 249 2836 1270 3187 74 1005 0 0 664 249 0
Pdzbase 56 19 33 50 23 25 8 18 37 48 28 36 23 102 115 27 110 15 78 3 1 110 43 74 115 35 0 0 26 15 0
Pharmgkb 1812 1218 1086 1032 858 472 532 677 656 775 636 706 683 1228 2038 646 2077 184 1549 60 118 1789 886 1005 35 3529 0 0 1710 987 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 1743 1859 1470 640 533 271 638 959 439 515 464 611 462 949 1628 440 1702 110 1291 65 49 1433 625 664 26 1710 0 0 6614 1397 0
Ttd 535 1156 295 266 229 107 147 204 184 212 137 90 205 256 495 133 451 52 345 29 14 401 178 249 15 987 0 0 1397 3500 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of defined biological pathways in interaction data sources.***
Reactome 1218
Kegg 250
Humancyc 303
Pid 225
Biocarta 254
Netpath 26
Inoh 93
Ehmn 69
Phosphositeplus 0
Innatedb 0
Intact-ss 0
Intact-ls 0
Dip 0
Mint 0
Hprd 0
Corum 0
Biogrid 0
Mips-mppi 0
Bind 0
Matrixdb 0
Pin 0
Spike 0
Pig 0
Phosphopoint 0
Pdzbase 0
Pharmgkb 82
Smpdb 411
Signalink 15
Drugbank 0
Ttd 0
Wikipathways 391



Versions of integrated databases
Reactome 40
Kegg 62.0
Humancyc 16.0
Pid 2012_03_16
Biocarta 2009_05_12
Netpath 4.4.2012
Inoh 4.4.2012
Ehmn 4.4.2012
Phosphositeplus 4.4.2012
Innatedb 4.4.2012
Intact-ss 2012-03-19Z
Intact-ls 2005-11-01Z
Dip 2012-02-28
Mint 2010-12-17+01:00
Hprd I_041210
Corum 4.4.2012
Biogrid 3.1.86
Mips-mppi 4.4.2012
Bind 4.4.2012
Matrixdb 20120113
Pin 4.4.2012
Spike 4.4.2012
Pig 5.4.2012
Phosphopoint 5.4.2012
Pdzbase 5.4.2012
Pharmgkb 5.4.2012
Smpdb 5.4.2012
Signalink 5.4.2012
Drugbank 5.4.2012
Ttd 5.4.2012
Wikipathways 5.4.2012



* Interactions are nonredundant if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and regulated gene in gene regulatory interactions) have different accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of nonredundant interactions.
** Physical entities are nonredundant if they have different accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of nonredundant entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.