ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    154537
interactions:    416872
pathways:    4078


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Chembl Wikipathways
Reactome 10924 416 407 389 127 118 5 463 62 132 400 256 168 701 141 522 11 376 112 5 21 353 0 144 0 0 0 0 2 0 0 0
Kegg 416 6145 297 0 4 0 0 1112 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 580 53 148 0
Humancyc 407 297 2875 6 10 1 0 332 0 10 59 30 29 154 11 95 0 80 4 0 0 36 0 4 0 0 0 0 0 0 0 0
Pid 389 0 6 7719 318 356 13 3 379 269 307 224 145 670 137 549 20 275 112 2 5 687 0 463 0 0 0 0 0 0 0 0
Biocarta 127 4 10 318 2323 171 2 10 199 118 93 68 48 153 43 139 8 81 42 0 2 307 0 211 0 0 0 0 0 0 0 0
Netpath 118 0 1 356 171 2839 4 0 382 442 603 321 435 1470 58 1159 20 310 89 1 2 1575 0 872 0 0 0 0 0 0 0 0
Inoh 5 0 0 13 2 4 40 0 2 0 3 2 3 3 1 3 0 7 0 0 0 5 0 2 0 0 0 0 0 0 0 0
Ehmn 463 1112 332 3 10 0 0 3893 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
Phosphositeplus 62 0 0 379 199 382 2 0 1896 204 0 0 0 0 0 0 0 0 0 0 0 744 0 755 0 0 0 0 0 0 0 0
Innatedb 132 0 10 269 118 442 0 0 204 9088 1311 363 618 2110 71 3143 34 614 157 6 2 1434 0 929 0 0 0 0 0 0 0 0
Intact 400 0 59 307 93 603 3 0 0 1311 47585 1269 16051 12771 317 25847 108 2934 673 16 29 21784 0 2402 0 0 0 0 0 0 0 0
Dip 256 0 30 224 68 321 2 0 0 363 1269 4797 662 1727 149 2407 47 652 508 4 7 1142 0 421 0 0 0 0 1 0 0 0
Mint 168 0 29 145 48 435 3 0 0 618 16051 662 18064 8269 124 11215 60 1757 322 2 7 11295 0 1698 0 0 0 0 0 0 0 0
Hprd 701 0 154 670 153 1470 3 0 0 2110 12771 1727 8269 40485 601 23851 284 5934 830 33 29 16661 0 7119 0 0 0 0 2 0 0 0
Corum 141 0 11 137 43 58 1 0 0 71 317 149 124 601 1682 337 10 248 75 0 72 242 0 66 0 0 0 0 0 0 0 0
Biogrid 522 0 95 549 139 1159 3 0 0 3143 25847 2407 11215 23851 337 139162 227 4823 988 26 19 19652 0 4079 0 0 0 0 0 0 0 0
Mips-mppi 11 0 0 20 8 20 0 0 0 34 108 47 60 284 10 227 323 272 36 2 0 153 0 40 0 0 0 0 0 0 0 0
Bind 376 0 80 275 81 310 7 0 0 614 2934 652 1757 5934 248 4823 272 18778 408 9 6 3396 0 1367 0 0 0 0 26 0 0 0
Pdb 112 0 4 112 42 89 0 0 0 157 673 508 322 830 75 988 36 408 1796 4 6 580 0 130 0 0 0 0 0 0 0 0
Matrixdb 5 0 0 2 0 1 0 0 0 6 16 4 2 33 0 26 2 9 4 294 0 11 0 1 0 0 0 0 0 0 0 0
Pindb 21 0 0 5 2 2 0 0 0 2 29 7 7 29 72 19 0 6 6 0 207 21 0 4 0 0 0 0 0 0 0 0
Spike 353 0 36 687 307 1575 5 1 744 1434 21784 1142 11295 16661 242 19652 153 3396 580 11 21 38740 0 3576 0 0 0 0 1 0 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20090 0 0 0 0 0 0 0 0 0
Phosphopoint 144 0 4 463 211 872 2 0 755 929 2402 421 1698 7119 66 4079 40 1367 130 1 4 3576 0 10029 0 0 0 0 0 0 0 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Pharmgkb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 2 580 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 26 0 0 0 1 0 0 0 0 0 0 13726 562 481 0
Ttd 0 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 562 3230 144 0
Chembl 0 148 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 481 144 143270 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Chembl Wikipathways
Reactome 17837 1982 2887 2034 1205 954 20 1921 1224 1596 4717 1688 3140 4648 1761 5620 295 3717 1194 130 410 4204 1940 1858 0 102 0 0 1968 595 1041 0
Kegg 1982 4258 2078 276 227 109 2 2030 179 194 1035 185 576 948 159 1391 28 945 116 8 36 870 363 237 0 240 0 0 1313 514 495 0
Humancyc 2887 2078 8393 682 494 358 6 2172 640 633 2296 563 1364 2067 498 2868 84 1863 350 41 95 1941 741 848 0 64 0 0 1517 305 842 0
Pid 2034 276 682 6950 1057 885 23 373 961 1277 2314 1166 1682 2353 1015 2645 262 2135 763 85 202 2604 1053 1398 0 26 0 0 640 266 522 0
Biocarta 1205 227 494 1057 2884 534 15 281 572 746 1262 706 971 1309 643 1386 187 1151 465 44 134 1325 682 822 0 41 0 0 532 227 404 0
Netpath 954 109 358 885 534 1611 16 202 612 764 1283 718 1081 1303 639 1342 185 1069 443 28 116 1304 689 909 0 4 0 0 309 134 302 0
Inoh 20 2 6 23 15 16 50 6 13 13 14 14 15 15 16 15 8 17 11 1 1 15 11 15 0 0 0 0 10 3 5 0
Ehmn 1921 2030 2172 373 281 202 6 4379 317 313 1156 279 703 1047 294 1442 41 1011 178 17 55 971 404 426 0 55 0 0 962 204 428 0
Phosphositeplus 1224 179 640 961 572 612 13 317 1980 915 1843 890 1459 1801 750 1938 204 1427 550 29 194 1756 846 1285 0 1 0 0 465 191 497 0
Innatedb 1596 194 633 1277 746 764 13 313 915 4006 2576 1138 1954 2519 984 2914 238 2314 724 71 240 2578 1223 1357 0 5 0 0 561 222 440 0
Intact 4717 1035 2296 2314 1262 1283 14 1156 1843 2576 12684 2372 6693 8139 2382 10830 373 6146 1606 125 632 8373 3363 2898 0 21 0 0 1591 422 957 0
Dip 1688 185 563 1166 706 718 14 279 890 1138 2372 2633 1872 2374 1192 2524 252 1971 1010 64 369 2299 1195 1230 0 16 0 0 543 236 407 0
Mint 3140 576 1364 1682 971 1081 15 703 1459 1954 6693 1872 7230 5756 1928 6431 323 4174 1272 81 499 5854 2420 2329 0 11 0 0 1030 271 652 0
Hprd 4648 948 2067 2353 1309 1303 15 1047 1801 2519 8139 2374 5756 9845 2278 9305 385 5671 1565 141 596 7745 3032 3092 0 26 0 0 1627 496 1057 0
Corum 1761 159 498 1015 643 639 16 294 750 984 2382 1192 1928 2278 4225 2489 230 1974 727 48 555 2301 1138 1130 0 3 0 0 440 133 298 0
Biogrid 5620 1391 2868 2645 1386 1342 15 1442 1938 2914 10830 2524 6431 9305 2489 17839 386 8037 1670 139 652 9109 3763 3104 0 23 0 0 1928 502 1107 0
Mips-mppi 295 28 84 262 187 185 8 41 204 238 373 252 323 385 230 386 400 383 166 13 56 376 228 277 0 1 0 0 111 52 100 0
Bind 3717 945 1863 2135 1151 1069 17 1011 1427 2314 6146 1971 4174 5671 1974 8037 383 12771 1352 116 499 5897 2473 2299 0 61 0 0 1524 426 837 0
Pdb 1194 116 350 763 465 443 11 178 550 724 1606 1010 1272 1565 727 1670 166 1352 1824 50 174 1519 732 817 0 15 0 0 435 172 297 0
Matrixdb 130 8 41 85 44 28 1 17 29 71 125 64 81 141 48 139 13 116 50 195 2 131 71 58 0 2 0 0 65 29 39 0
Pindb 410 36 95 202 134 116 1 55 194 240 632 369 499 596 555 652 56 499 174 2 862 606 326 249 0 0 0 0 49 14 45 0
Spike 4204 870 1941 2604 1325 1304 15 971 1756 2578 8373 2299 5854 7745 2301 9109 376 5897 1519 131 606 10913 3005 2836 0 27 0 0 1434 401 898 0
Pig 1940 363 741 1053 682 689 11 404 846 1223 3363 1195 2420 3032 1138 3763 228 2473 732 71 326 3005 7572 1272 0 8 0 0 631 178 376 0
Phosphopoint 1858 237 848 1398 822 909 15 426 1285 1357 2898 1230 2329 3092 1130 3104 277 2299 817 58 249 2836 1272 3187 0 6 0 0 663 249 613 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Pharmgkb 102 240 64 26 41 4 0 55 1 5 21 16 11 26 3 23 1 61 15 2 0 27 8 6 0 1045 0 0 932 735 219 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 624 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 1968 1313 1517 640 532 309 10 962 465 561 1591 543 1030 1627 440 1928 111 1524 435 65 49 1434 631 663 0 932 0 0 6601 1407 1047 0
Ttd 595 514 305 266 227 134 3 204 191 222 422 236 271 496 133 502 52 426 172 29 14 401 178 249 0 735 0 0 1407 3536 685 0
Chembl 1041 495 842 522 404 302 5 428 497 440 957 407 652 1057 298 1107 100 837 297 39 45 898 376 613 0 219 0 0 1047 685 93723 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 607


Number of defined biological pathways in interaction data sources.***
Reactome 1522
Kegg 287
Humancyc 325
Pid 226
Biocarta 254
Netpath 35
Inoh 1
Ehmn 69
Phosphositeplus 0
Innatedb 0
Intact 0
Dip 0
Mint 0
Hprd 0
Corum 0
Biogrid 0
Mips-mppi 0
Bind 0
Pdb 0
Matrixdb 0
Pindb 0
Spike 0
Pig 0
Phosphopoint 0
Pdzbase 0
Pharmgkb 113
Smpdb 624
Signalink 15
Drugbank 0
Ttd 0
Chembl 0
Wikipathways 607



Versions of integrated databases
Reactome 48
Kegg 70.0
Humancyc 18.1
Pid 2014_02_14
Biocarta 2009_05_12
Netpath 22.6.2014
Inoh 22.6.2014
Ehmn 22.6.2014
Phosphositeplus 22.6.2014
Innatedb 22.6.2014
Intact 2013-09-02+01:00
Dip 2014-04-27
Mint 2011-12-02+01:00
Hprd I_041210
Corum 22.6.2014
Biogrid 3.2.112
Mips-mppi 23.6.2014
Bind 23.6.2014
Pdb 23.6.2014
Matrixdb 20120801
Pindb 23.6.2014
Spike 24.6.2014
Pig 25.6.2014
Phosphopoint 25.6.2014
Pdzbase 26.6.2014
Pharmgkb 26.6.2014
Smpdb 26.6.2014
Signalink 26.6.2014
Drugbank 26.6.2014
Ttd 26.6.2014
Chembl 26.6.2014
Wikipathways 27.6.2014



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.