ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    155930
interactions:    435360
pathways:    4349


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Chembl Wikipathways
Reactome 11796 409 413 409 135 128 5 445 69 147 427 271 175 726 144 579 12 392 121 5 23 376 0 150 0 0 0 0 4 0 0 0
Kegg 409 6319 289 0 4 0 0 1102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 581 55 149 0
Humancyc 413 289 2877 6 10 1 0 325 0 10 63 33 30 156 11 126 0 82 5 0 0 36 0 4 0 0 0 0 0 0 0 0
Pid 409 0 6 7719 318 356 13 3 380 275 321 228 145 670 137 553 20 275 117 3 5 687 0 463 0 0 0 0 0 0 0 0
Biocarta 135 4 10 318 2323 170 2 10 199 122 95 71 48 153 43 140 8 81 42 0 2 307 0 211 0 0 0 0 0 0 0 0
Netpath 128 0 1 356 170 2839 4 0 388 449 637 325 435 1470 58 1165 20 310 89 2 2 1575 0 872 0 0 0 0 0 0 0 0
Inoh 5 0 0 13 2 4 40 0 2 0 3 2 3 3 1 3 0 7 0 0 0 5 0 2 0 0 0 0 0 0 0 0
Ehmn 445 1102 325 3 10 0 0 3893 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
Phosphositeplus 69 0 0 380 199 388 2 0 1917 206 0 0 0 0 0 0 0 0 0 0 0 747 0 759 0 0 0 0 0 0 0 0
Innatedb 147 0 10 275 122 449 0 0 206 11845 1595 417 642 2199 82 5238 34 652 179 6 2 1537 0 937 0 0 0 0 0 0 0 0
Intact 427 0 63 321 95 637 3 0 0 1595 50965 1366 16070 13138 327 26810 112 2999 724 53 29 21930 0 2581 0 0 0 0 0 0 0 0
Dip 271 0 33 228 71 325 2 0 0 417 1366 5070 679 1786 154 2582 48 671 556 7 8 1180 0 430 0 0 0 0 1 0 0 0
Mint 175 0 30 145 48 435 3 0 0 642 16070 679 18066 8282 124 11624 60 1756 329 3 7 11309 0 1697 0 0 0 0 0 0 0 0
Hprd 726 0 156 670 153 1470 3 0 0 2199 13138 1786 8282 40485 602 24044 285 5936 880 43 29 16659 0 7119 0 0 0 0 2 0 0 0
Corum 144 0 11 137 43 58 1 0 0 82 327 154 124 602 1682 341 10 248 77 1 72 242 0 66 0 0 0 0 0 0 0 0
Biogrid 579 0 126 553 140 1165 3 0 0 5238 26810 2582 11624 24044 341 153890 229 4889 982 32 19 19752 0 4092 0 0 0 0 0 0 0 0
Mips-mppi 12 0 0 20 8 20 0 0 0 34 112 48 60 285 10 229 323 273 36 2 0 153 0 40 0 0 0 0 0 0 0 0
Bind 392 0 82 275 81 310 7 0 0 652 2999 671 1756 5936 248 4889 273 18777 421 8 6 3394 0 1367 0 0 0 0 26 0 0 0
Pdb 121 0 5 117 42 89 0 0 0 179 724 556 329 880 77 982 36 421 1793 5 6 599 0 139 0 0 0 0 0 0 0 0
Matrixdb 5 0 0 3 0 2 0 0 0 6 53 7 3 43 1 32 2 8 5 436 0 14 0 2 0 0 0 0 0 0 0 0
Pindb 23 0 0 5 2 2 0 0 0 2 29 8 7 29 72 19 0 6 6 0 207 21 0 4 0 0 0 0 0 0 0 0
Spike 376 0 36 687 307 1575 5 1 747 1537 21930 1180 11309 16659 242 19752 153 3394 599 14 21 38742 0 3576 0 0 0 0 1 0 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20090 0 0 0 0 0 0 0 0 0
Phosphopoint 150 0 4 463 211 872 2 0 759 937 2581 430 1697 7119 66 4092 40 1367 139 2 4 3576 0 10029 0 0 0 0 0 0 0 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Pharmgkb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 4 581 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 26 0 0 0 1 0 0 0 0 0 0 13726 562 495 0
Ttd 0 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 562 3230 146 0
Chembl 0 149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 495 146 143270 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Chembl Wikipathways
Reactome 19062 1991 2953 2108 1221 998 20 1919 1279 2110 5090 1862 3344 4872 1907 6058 300 3931 1218 157 447 4451 2032 1922 0 102 0 0 2005 601 1063 0
Kegg 1991 4294 2076 274 229 108 2 2019 183 297 1052 204 576 949 159 1417 30 945 124 10 36 871 364 237 0 240 0 0 1318 521 498 0
Humancyc 2953 2076 8412 681 491 359 6 2169 649 818 2317 588 1362 2064 497 2894 84 1863 373 47 94 1939 739 847 0 64 0 0 1518 305 841 0
Pid 2108 274 681 6950 1056 885 23 372 966 1395 2348 1199 1682 2352 1016 2660 262 2135 783 104 202 2603 1053 1398 0 26 0 0 640 266 522 0
Biocarta 1221 229 491 1056 2884 533 15 281 574 831 1270 728 970 1309 644 1395 187 1151 477 54 134 1325 681 822 0 41 0 0 532 227 406 0
Netpath 998 108 359 885 533 1611 16 201 618 833 1287 743 1082 1302 640 1341 185 1069 451 39 116 1303 689 909 0 4 0 0 309 134 302 0
Inoh 20 2 6 23 15 16 50 6 13 13 14 14 15 15 16 15 8 17 11 1 1 15 11 15 0 0 0 0 10 3 5 0
Ehmn 1919 2019 2169 372 281 201 6 4379 322 432 1169 290 703 1047 294 1456 41 1011 189 18 55 971 403 426 0 55 0 0 962 204 424 0
Phosphositeplus 1279 183 649 966 574 618 13 322 2004 1078 1871 936 1470 1822 756 1965 206 1443 563 34 194 1772 855 1297 0 1 0 0 469 194 504 0
Innatedb 2110 297 818 1395 831 833 13 432 1078 5190 3615 1428 2613 3288 1299 4041 250 2948 870 88 328 3410 1575 1601 0 4 0 0 709 236 484 0
Intact 5090 1052 2317 2348 1270 1287 14 1169 1871 3615 13172 2508 6703 8208 2391 11081 374 6234 1625 157 634 8434 3398 2919 0 21 0 0 1613 431 973 0
Dip 1862 204 588 1199 728 743 14 290 936 1428 2508 2760 1961 2480 1234 2662 258 2056 1086 83 382 2405 1251 1277 0 16 0 0 569 245 425 0
Mint 3344 576 1362 1682 970 1082 15 703 1470 2613 6703 1961 7223 5760 1928 6471 323 4172 1269 101 499 5858 2422 2329 0 11 0 0 1031 271 652 0
Hprd 4872 949 2064 2352 1309 1302 15 1047 1822 3288 8208 2480 5760 9846 2280 9357 386 5672 1585 173 596 7746 3030 3092 0 26 0 0 1628 497 1058 0
Corum 1907 159 497 1016 644 640 16 294 756 1299 2391 1234 1928 2280 4225 2491 230 1974 690 55 555 2302 1139 1131 0 3 0 0 440 133 298 0
Biogrid 6058 1417 2894 2660 1395 1341 15 1456 1965 4041 11081 2662 6471 9357 2491 18269 387 8110 1689 174 652 9149 3801 3105 0 23 0 0 1947 511 1113 0
Mips-mppi 300 30 84 262 187 185 8 41 206 250 374 258 323 386 230 387 400 384 168 15 56 377 228 277 0 1 0 0 111 52 100 0
Bind 3931 945 1863 2135 1151 1069 17 1011 1443 2948 6234 2056 4172 5672 1974 8110 384 12764 1345 138 499 5898 2475 2299 0 61 0 0 1525 427 839 0
Pdb 1218 124 373 783 477 451 11 189 563 870 1625 1086 1269 1585 690 1689 168 1345 1850 67 185 1525 758 801 0 15 0 0 439 179 309 0
Matrixdb 157 10 47 104 54 39 1 18 34 88 157 83 101 173 55 174 15 138 67 217 3 160 89 71 0 4 0 0 80 37 48 0
Pindb 447 36 94 202 134 116 1 55 194 328 634 382 499 596 555 652 56 499 185 3 862 606 326 249 0 0 0 0 49 14 45 0
Spike 4451 871 1939 2603 1325 1303 15 971 1772 3410 8434 2405 5858 7746 2302 9149 377 5898 1525 160 606 10914 3004 2836 0 27 0 0 1435 402 899 0
Pig 2032 364 739 1053 681 689 11 403 855 1575 3398 1251 2422 3030 1139 3801 228 2475 758 89 326 3004 7571 1272 0 8 0 0 631 178 376 0
Phosphopoint 1922 237 847 1398 822 909 15 426 1297 1601 2919 1277 2329 3092 1131 3105 277 2299 801 71 249 2836 1272 3187 0 6 0 0 663 249 613 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Pharmgkb 102 240 64 26 41 4 0 55 1 4 21 16 11 26 3 23 1 61 15 4 0 27 8 6 0 1045 0 0 932 736 219 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 718 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 2005 1318 1518 640 532 309 10 962 469 709 1613 569 1031 1628 440 1947 111 1525 439 80 49 1435 631 663 0 932 0 0 6601 1409 1054 0
Ttd 601 521 305 266 227 134 3 204 194 236 431 245 271 497 133 511 52 427 179 37 14 402 178 249 0 736 0 0 1409 3536 688 0
Chembl 1063 498 841 522 406 302 5 424 504 484 973 425 652 1058 298 1113 100 839 309 48 45 899 376 613 0 219 0 0 1054 688 93724 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 631


Number of defined biological pathways in interaction data sources.***
Reactome 1669
Kegg 291
Humancyc 327
Pid 226
Biocarta 254
Netpath 35
Inoh 1
Ehmn 69
Phosphositeplus 0
Innatedb 0
Intact 0
Dip 0
Mint 0
Hprd 0
Corum 0
Biogrid 0
Mips-mppi 0
Bind 0
Pdb 0
Matrixdb 0
Pindb 0
Spike 0
Pig 0
Phosphopoint 0
Pdzbase 0
Pharmgkb 113
Smpdb 718
Signalink 15
Drugbank 0
Ttd 0
Chembl 0
Wikipathways 631



Versions of integrated databases
Reactome 51
Kegg 73.0
Humancyc 18.5
Pid 2014_02_14
Biocarta 2009_05_12
Netpath 1.1.2015
Inoh 1.1.2015
Ehmn 1.1.2015
Phosphositeplus 1.1.2015
Innatedb 1.1.2015
Intact 2013-09-02+01:00
Dip 2014-10-01
Mint 2011-12-02+01:00
Hprd I_041210
Corum 5.1.2015
Biogrid 3.2.119
Mips-mppi 6.1.2015
Bind 6.1.2015
Pdb 6.1.2015
Matrixdb 20120801
Pindb 6.1.2015
Spike 6.1.2015
Pig 7.1.2015
Phosphopoint 7.1.2015
Pdzbase 8.1.2015
Pharmgkb 8.1.2015
Smpdb 8.1.2015
Signalink 8.1.2015
Drugbank 8.1.2015
Ttd 8.1.2015
Chembl 8.1.2015
Wikipathways 9.1.2015



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.