ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    163381
interactions:    534634
pathways:    5068


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Drugbank Ttd Chembl
Reactome 16169 446 443 464 147 142 272 481 84 196 638 383 218 941 163 818 13 453 178 7 26 464 0 188 2 4 0 0
Kegg 446 6585 284 0 4 0 372 1089 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 530 46 129
Humancyc 443 284 2937 6 10 1 128 326 0 11 95 37 31 152 10 131 0 79 5 0 0 35 0 4 0 0 0 0
Pid 464 0 6 7719 318 356 113 3 402 262 347 244 145 670 137 573 20 275 127 5 5 687 0 463 7 0 0 0
Biocarta 147 4 10 318 2323 171 54 10 213 120 98 74 48 153 43 142 8 81 49 0 2 307 0 211 0 0 0 0
Netpath 142 0 1 356 171 2839 79 0 424 433 644 331 435 1468 58 1199 20 310 94 2 2 1573 0 872 0 0 0 0
Inoh 272 372 128 113 54 79 1898 387 35 51 66 48 34 95 24 77 1 60 15 0 0 98 0 61 0 0 0 0
Ehmn 481 1089 326 3 10 0 387 3893 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
Phosphositeplus 84 0 0 402 213 424 35 0 2260 227 0 0 0 0 0 0 0 0 0 0 0 827 0 781 0 0 0 0
Innatedb 196 0 11 262 120 433 51 0 227 12905 2186 466 674 2206 78 6081 31 649 209 9 2 1553 0 928 7 0 0 0
Intact 638 0 95 347 98 644 66 0 0 2186 91478 1693 16183 13713 342 39902 117 3251 943 64 32 22050 0 2635 53 0 0 0
Dip 383 0 37 244 74 331 48 0 0 466 1693 6426 743 1977 181 3112 52 728 695 11 11 1302 0 462 3 1 0 0
Mint 218 0 31 145 48 435 34 0 0 674 16183 743 18058 8391 124 12097 60 1760 390 5 7 11408 0 1703 54 0 0 0
Hprd 941 0 152 670 153 1468 95 0 0 2206 13713 1977 8391 40485 603 24492 284 5934 1014 46 29 16655 0 7110 93 2 0 0
Corum 163 0 10 137 43 58 24 0 0 78 342 181 124 603 1685 354 10 249 90 1 71 242 0 66 0 0 0 0
Biogrid 818 0 131 573 142 1199 77 0 0 6081 39902 3112 12097 24492 354 219471 235 5042 1336 44 19 19995 0 4284 65 0 0 0
Mips-mppi 13 0 0 20 8 20 1 0 0 31 117 52 60 284 10 235 323 271 35 2 0 152 0 40 3 0 0 0
Bind 453 0 79 275 81 310 60 0 0 649 3251 728 1760 5934 249 5042 271 18777 464 10 6 3393 0 1365 20 26 0 0
Pdb 178 0 5 127 49 94 15 0 0 209 943 695 390 1014 90 1336 35 464 2338 6 7 711 0 162 6 0 0 0
Matrixdb 7 0 0 5 0 2 0 0 0 9 64 11 5 46 1 44 2 10 6 480 0 18 0 4 0 0 0 0
Pindb 26 0 0 5 2 2 0 0 0 2 32 11 7 29 71 19 0 6 7 0 207 21 0 4 0 0 0 0
Spike 464 0 35 687 307 1573 98 1 827 1553 22050 1302 11408 16655 242 19995 152 3393 711 18 21 38742 0 3560 60 1 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20090 0 0 0 0 0
Phosphopoint 188 0 4 463 211 872 61 0 781 928 2635 462 1703 7110 66 4284 40 1365 162 4 4 3560 0 10034 20 0 0 0
Pdzbase 2 0 0 7 0 0 0 0 0 7 53 3 54 93 0 65 3 20 6 0 0 60 0 20 101 0 0 0
Drugbank 4 530 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 26 0 0 0 1 0 0 0 13725 561 513
Ttd 0 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 561 3228 146
Chembl 0 129 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 513 146 143270


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Drugbank Ttd Chembl Wikipathways
Reactome 25517 2295 3525 2442 1355 1150 1208 2197 1753 2984 7725 2600 4320 6348 2260 8365 339 5047 1760 197 549 5859 2607 2318 91 108 0 2260 659 1160 0
Kegg 2295 4358 2100 268 227 104 1053 2019 198 347 1266 238 573 936 160 1469 25 931 136 15 35 868 365 227 9 227 0 1282 491 464 0
Humancyc 3525 2100 8588 680 490 358 1009 2165 723 916 2647 686 1369 2063 492 2962 84 1860 455 55 94 1934 741 845 33 64 0 1517 306 840 0
Pid 2442 268 680 6950 1056 885 395 373 1078 1463 2503 1326 1684 2350 1017 2702 262 2133 891 125 201 2600 1053 1398 50 26 0 640 266 523 0
Biocarta 1355 227 490 1056 2884 533 309 281 624 860 1326 796 973 1309 642 1402 186 1151 536 67 134 1325 681 822 23 41 0 532 227 405 0
Netpath 1150 104 358 885 533 1611 243 202 679 860 1325 805 1083 1301 640 1349 185 1068 523 47 115 1301 689 909 29 4 0 309 134 302 0
Inoh 1208 1053 1009 395 309 243 2314 837 245 340 735 292 436 624 214 788 60 641 189 21 11 611 292 297 8 26 0 640 147 230 0
Ehmn 2197 2019 2165 373 281 202 837 4379 358 477 1316 342 705 1047 294 1494 41 1011 229 23 55 971 404 426 18 55 0 961 204 424 0
Phosphositeplus 1753 198 723 1078 624 679 245 358 2350 1295 2251 1184 1697 2103 865 2298 225 1672 732 58 229 2054 984 1422 45 1 0 515 202 528 0
Innatedb 2984 347 916 1463 860 860 340 477 1295 5679 4265 1719 2880 3595 1368 4564 262 3198 1079 114 346 3703 1697 1698 51 4 0 775 246 514 0
Intact 7725 1266 2647 2503 1326 1325 735 1316 2251 4265 17299 3061 6759 8773 2464 13185 381 6853 2019 194 645 8813 3719 3007 112 22 0 1800 459 1047 0
Dip 2600 238 686 1326 796 805 292 342 1184 1719 3061 3256 2258 2867 1367 3144 275 2340 1338 108 415 2782 1427 1424 42 16 0 650 273 476 0
Mint 4320 573 1369 1684 973 1083 436 705 1697 2880 6759 2258 7183 5778 1930 6506 323 4182 1496 127 498 5874 2424 2335 102 11 0 1033 271 656 0
Hprd 6348 936 2063 2350 1309 1301 624 1047 2103 3595 8773 2867 5778 9846 2280 9417 385 5671 1876 200 596 7745 3035 3091 115 25 0 1625 498 1058 0
Corum 2260 160 492 1017 642 640 214 294 865 1368 2464 1367 1930 2280 4230 2501 230 1974 832 73 554 2302 1139 1131 27 3 0 440 133 298 0
Biogrid 8365 1469 2962 2702 1402 1349 788 1494 2298 4564 13185 3144 6506 9417 2501 19810 386 8623 2046 202 654 9232 3808 3121 114 22 0 1976 514 1122 0
Mips-mppi 339 25 84 262 186 185 60 41 225 262 381 275 323 385 230 386 400 383 178 21 55 376 228 277 15 1 0 111 52 100 0
Bind 5047 931 1860 2133 1151 1068 641 1011 1672 3198 6853 2340 4182 5671 1974 8623 383 12767 1575 164 499 5898 2478 2299 82 60 0 1521 427 839 0
Pdb 1760 136 455 891 536 523 189 229 732 1079 2019 1338 1496 1876 832 2046 178 1575 2233 87 230 1824 890 923 39 16 0 497 192 348 0
Matrixdb 197 15 55 125 67 47 21 23 58 114 194 108 127 200 73 202 21 164 87 250 12 187 104 90 4 4 0 91 44 57 0
Pindb 549 35 94 201 134 115 11 55 229 346 645 415 498 596 554 654 55 499 230 12 862 606 327 248 1 0 0 48 14 44 0
Spike 5859 868 1934 2600 1325 1301 611 971 2054 3703 8813 2782 5874 7745 2302 9232 376 5898 1824 187 606 10914 3007 2836 110 26 0 1429 403 899 0
Pig 2607 365 741 1053 681 689 292 404 984 1697 3719 1427 2424 3035 1139 3808 228 2478 890 104 327 3007 7570 1271 43 8 0 631 178 376 0
Phosphopoint 2318 227 845 1398 822 909 297 426 1422 1698 3007 1424 2335 3091 1131 3121 277 2299 923 90 248 2836 1271 3188 74 6 0 663 249 613 0
Pdzbase 91 9 33 50 23 29 8 18 45 51 112 42 102 115 27 114 15 82 39 4 1 110 43 74 115 0 0 26 15 24 0
Pharmgkb 108 227 64 26 41 4 26 55 1 4 22 16 11 25 3 22 1 60 16 4 0 26 8 6 0 1045 0 932 736 221 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 724 0 0 0 0
Drugbank 2260 1282 1517 640 532 309 640 961 515 775 1800 650 1033 1625 440 1976 111 1521 497 91 48 1429 631 663 26 932 0 6600 1409 1064 0
Ttd 659 491 306 266 227 134 147 204 202 246 459 273 271 498 133 514 52 427 192 44 14 403 178 249 15 736 0 1409 3534 691 0
Chembl 1160 464 840 523 405 302 230 424 528 514 1047 476 656 1058 298 1122 100 839 348 57 44 899 376 613 24 221 0 1064 691 93724 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 822


Number of defined biological pathways in interaction data sources.***
Reactome 2080
Kegg 306
Humancyc 331
Pid 226
Biocarta 254
Netpath 35
Inoh 93
Ehmn 69
Pharmgkb 113
Smpdb 724
Signalink 15
Wikipathways 822



Versions of integrated databases
Reactome 59
Kegg 80.0
Humancyc 19.1
Pid 2014_02_14
Biocarta 2009_05_12
Netpath 24.12.2016
Inoh 24.12.2016
Ehmn 24.12.2016
Phosphositeplus 24.12.2016
Innatedb 25.12.2016
Intact 2013-09-02+01:00
Dip 2016-07-31
Mint 2011-12-02+01:00
Hprd I_041210
Corum 25.12.2016
Biogrid 3.4.143
Mips-mppi 25.12.2016
Bind 25.12.2016
Pdb 25.12.2016
Matrixdb 20120801
Pindb 25.12.2016
Spike 25.12.2016
Pig 27.12.2016
Phosphopoint 27.12.2016
Pdzbase 27.12.2016
Pharmgkb 27.12.2016
Smpdb 27.12.2016
Signalink 27.12.2016
Drugbank 27.12.2016
Ttd 27.12.2016
Chembl 27.12.2016
Wikipathways 28.12.2016



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.