ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    158366
interactions:    411317
pathways:    5205


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pharmgkb Smpdb Signalink Drugbank Ttd Chembl Wikipathways Pdzbase
Reactome 10472 409 371 2508 126 113 259 457 60 130 411 223 164 676 136 492 11 365 104 5 21 342 0 138 0 0 0 2 0 0 0 0
Kegg 409 6108 315 279 4 0 371 1115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 578 48 145 0 0
Humancyc 371 315 2754 266 9 1 148 337 0 10 48 21 26 125 11 82 0 66 4 0 0 31 0 4 0 0 0 0 0 0 0 0
Pid 2508 279 266 15516 1365 420 279 338 459 331 537 324 231 1070 212 834 27 470 176 2 20 949 0 591 0 0 0 2 0 0 0 0
Biocarta 126 4 9 1365 2323 168 54 10 198 118 93 62 48 153 43 138 8 81 42 0 2 307 0 211 0 0 0 0 0 0 0 0
Netpath 113 0 1 420 168 2761 79 0 367 437 587 293 433 1454 57 1139 20 303 84 1 2 1564 0 854 0 0 0 0 0 0 0 0
Inoh 259 371 148 279 54 79 1898 387 33 51 57 40 34 95 24 74 1 60 11 0 0 98 0 61 0 0 0 0 0 0 0 0
Ehmn 457 1115 337 338 10 0 387 3893 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
Phosphositeplus 60 0 0 459 198 367 33 0 1869 202 0 0 0 0 0 0 0 0 0 0 0 739 0 750 0 0 0 0 0 0 0 0
Innatedb 130 0 10 331 118 437 51 0 202 8676 1191 298 618 2105 69 2974 34 611 150 6 2 1426 0 934 0 0 0 0 0 0 0 0
Intact 411 0 48 537 93 587 57 0 0 1191 46339 1083 16112 12659 320 24922 107 2913 645 15 29 21614 0 2370 0 0 0 0 0 0 0 0
Dip 223 0 21 324 62 293 40 0 0 298 1083 4075 576 1520 135 1931 39 581 445 4 6 986 0 377 0 0 0 1 0 0 0 0
Mint 164 0 26 231 48 433 34 0 0 618 16112 576 18059 8330 124 11108 60 1759 315 2 7 11274 0 1699 0 0 0 0 0 0 0 0
Hprd 676 0 125 1070 153 1454 95 0 0 2105 12659 1520 8330 40485 601 23669 284 5933 806 33 29 16663 0 7116 0 0 0 2 0 0 0 0
Corum 136 0 11 212 43 57 24 0 0 69 320 135 124 601 1682 336 10 248 75 0 72 242 0 66 0 0 0 0 0 0 0 0
Biogrid 492 0 82 834 138 1139 74 0 0 2974 24922 1931 11108 23669 336 128811 226 4694 912 26 19 19402 0 4038 0 0 0 0 0 0 0 0
Mips-mppi 11 0 0 27 8 20 1 0 0 34 107 39 60 284 10 226 323 271 35 2 0 153 0 40 0 0 0 0 0 0 0 0
Bind 365 0 66 470 81 303 60 0 0 611 2913 581 1759 5933 248 4694 271 18782 401 9 6 3394 0 1367 0 0 0 26 0 0 0 0
Pdb 104 0 4 176 42 84 11 0 0 150 645 445 315 806 75 912 35 401 1680 4 5 557 0 126 0 0 0 0 0 0 0 0
Matrixdb 5 0 0 2 0 1 0 0 0 6 15 4 2 33 0 26 2 9 4 294 0 11 0 1 0 0 0 0 0 0 0 0
Pindb 21 0 0 20 2 2 0 0 0 2 29 6 7 29 72 19 0 6 5 0 207 21 0 4 0 0 0 0 0 0 0 0
Spike 342 0 31 949 307 1564 98 1 739 1426 21614 986 11274 16663 242 19402 153 3394 557 11 21 38740 0 3577 0 0 0 1 0 0 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20090 0 0 0 0 0 0 0 0 0
Phosphopoint 138 0 4 591 211 854 61 0 750 934 2370 377 1699 7116 66 4038 40 1367 126 1 4 3577 0 10029 0 0 0 0 0 0 0 0
Pharmgkb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 2 578 0 2 0 0 0 0 0 0 0 1 0 2 0 0 0 26 0 0 0 1 0 0 0 0 0 13726 550 474 0 0
Ttd 0 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 550 3256 141 0 0
Chembl 0 145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 474 141 143270 0 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Pdb Matrixdb Pindb Spike Pig Phosphopoint Pharmgkb Smpdb Signalink Drugbank Ttd Chembl Wikipathways Pdzbase
Reactome 17107 1946 2801 5360 1177 889 1108 1879 1176 1511 4492 1518 3024 4474 1675 5328 291 3595 1125 127 333 4023 1863 1809 101 0 0 1950 584 1030 0 0
Kegg 1946 4247 2053 1280 227 100 1065 2031 177 196 1013 175 574 949 159 1357 28 945 111 8 36 869 363 237 239 0 0 1304 505 492 0 0
Humancyc 2801 2053 8086 1961 492 345 1010 2166 636 616 2258 522 1366 2059 500 2804 83 1849 340 41 96 1933 737 847 62 0 0 1508 296 842 0 0
Pid 5360 1280 1961 14899 2091 1041 957 1404 1215 1683 3873 1553 2749 3924 1751 4473 309 3481 1094 98 359 4071 1699 1884 85 0 0 1456 460 819 0 0
Biocarta 1177 227 492 2091 2884 524 309 281 569 736 1252 671 972 1309 643 1383 187 1151 457 44 134 1325 682 822 41 0 0 532 229 403 0 0
Netpath 889 100 345 1041 524 1560 241 192 594 740 1250 659 1057 1267 631 1301 179 1046 421 26 115 1274 677 890 4 0 0 295 122 284 0 0
Inoh 1108 1065 1010 957 309 241 2314 838 217 258 657 246 436 625 214 771 60 642 159 14 11 612 292 297 26 0 0 640 146 230 0 0
Ehmn 1879 2031 2166 1404 281 192 838 4379 315 308 1140 265 704 1047 294 1411 41 1011 173 17 55 971 403 426 55 0 0 962 203 427 0 0
Phosphositeplus 1176 177 636 1215 569 594 217 315 1953 888 1811 821 1443 1775 744 1906 201 1407 526 29 191 1731 837 1270 1 0 0 462 189 493 0 0
Innatedb 1511 196 616 1683 736 740 258 308 888 3821 2497 1037 1906 2455 964 2811 237 2249 692 70 234 2519 1199 1328 5 0 0 554 220 427 0 0
Intact 4492 1013 2258 3873 1252 1250 657 1140 1811 2497 12529 2172 6706 8094 2376 10647 370 6110 1540 125 631 8354 3341 2892 21 0 0 1573 416 954 0 0
Dip 1518 175 522 1553 671 659 246 265 821 1037 2172 2420 1735 2197 1109 2310 243 1817 935 62 345 2114 1105 1143 16 0 0 521 229 392 0 0
Mint 3024 574 1366 2749 972 1057 436 704 1443 1906 6706 1735 7204 5764 1927 6428 323 4179 1232 81 498 5863 2419 2332 11 0 0 1031 271 655 0 0
Hprd 4474 949 2059 3924 1309 1267 625 1047 1775 2455 8094 2197 5764 9845 2277 9265 384 5672 1513 141 596 7746 3032 3090 26 0 0 1624 496 1056 0 0
Corum 1675 159 500 1751 643 631 214 294 744 964 2376 1109 1927 2277 4225 2485 230 1974 707 48 555 2300 1138 1130 3 0 0 440 133 298 0 0
Biogrid 5328 1357 2804 4473 1383 1301 771 1411 1906 2811 10647 2310 6428 9265 2485 17456 385 7979 1602 139 653 9077 3737 3096 23 0 0 1901 499 1096 0 0
Mips-mppi 291 28 83 309 187 179 60 41 201 237 370 243 323 384 230 385 400 383 164 13 56 375 228 277 1 0 0 111 52 100 0 0
Bind 3595 945 1849 3481 1151 1046 642 1011 1407 2249 6110 1817 4179 5672 1974 7979 383 12780 1306 116 499 5899 2472 2299 61 0 0 1524 425 836 0 0
Pdb 1125 111 340 1094 457 421 159 173 526 692 1540 935 1232 1513 707 1602 164 1306 1746 50 161 1465 712 797 15 0 0 426 170 291 0 0
Matrixdb 127 8 41 98 44 26 14 17 29 70 125 62 81 141 48 139 13 116 50 195 2 131 71 58 2 0 0 65 29 39 0 0
Pindb 333 36 96 359 134 115 11 55 191 234 631 345 498 596 555 653 56 499 161 2 862 606 326 248 0 0 0 49 14 45 0 0
Spike 4023 869 1933 4071 1325 1274 612 971 1731 2519 8354 2114 5863 7746 2300 9077 375 5899 1465 131 606 10913 3005 2835 27 0 0 1431 402 898 0 0
Pig 1863 363 737 1699 682 677 292 403 837 1199 3341 1105 2419 3032 1138 3737 228 2472 712 71 326 3005 7572 1270 8 0 0 630 178 376 0 0
Phosphopoint 1809 237 847 1884 822 890 297 426 1270 1328 2892 1143 2332 3090 1130 3096 277 2299 797 58 248 2835 1270 3187 6 0 0 662 249 613 0 0
Pharmgkb 101 239 62 85 41 4 26 55 1 5 21 16 11 26 3 23 1 61 15 2 0 27 8 6 1036 0 0 932 737 216 0 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 602 0 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 1950 1304 1508 1456 532 295 640 962 462 554 1573 521 1031 1624 440 1901 111 1524 426 65 49 1431 630 662 932 0 0 6601 1398 1048 0 0
Ttd 584 505 296 460 229 122 146 203 189 220 416 229 271 496 133 499 52 425 170 29 14 402 178 249 737 0 0 1398 3495 685 0 0
Chembl 1030 492 842 819 403 284 230 427 493 427 954 392 655 1056 298 1096 100 836 291 39 45 898 376 613 216 0 0 1048 685 93714 0 0
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 460 0
Pdzbase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


Number of defined biological pathways in interaction data sources.***
Reactome 1481
Kegg 281
Humancyc 336
Pid 1478
Biocarta 254
Netpath 32
Inoh 93
Ehmn 69
Phosphositeplus 0
Innatedb 0
Intact 0
Dip 0
Mint 0
Hprd 0
Corum 0
Biogrid 0
Mips-mppi 0
Bind 0
Pdb 0
Matrixdb 0
Pindb 0
Spike 0
Pig 0
Phosphopoint 0
Pharmgkb 104
Smpdb 602
Signalink 15
Drugbank 0
Ttd 0
Chembl 0
Wikipathways 460
Pdzbase 0



Versions of integrated databases
Reactome 46
Kegg 69.0
Humancyc 17.5
Pid 2012_09_18
Biocarta 2009_05_12
Netpath 8.1.2014
Inoh 8.1.2014
Ehmn 8.1.2014
Phosphositeplus 8.1.2014
Innatedb 8.1.2014
Intact 2013-09-02+01:00
Dip 2013-10-31
Mint 2011-12-02+01:00
Hprd I_041210
Corum 9.1.2014
Biogrid 3.2.106
Mips-mppi 9.1.2014
Bind 9.1.2014
Pdb 9.1.2014
Matrixdb 20120801
Pindb 9.1.2014
Spike 9.1.2014
Pig 10.1.2014
Phosphopoint 10.1.2014
Pharmgkb 11.1.2014
Smpdb 12.1.2014
Signalink 12.1.2014
Drugbank 12.1.2014
Ttd 12.1.2014
Chembl 12.1.2014
Wikipathways 12.1.2014
Pdzbase 23.1.2014



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.