ConsensusPathDB information     



ConsensusPathDB statistics

physical entities:    155205
interactions:    400368
pathways:    4873


Overlap statistics

Number of unique* interactions shared by databases. The numbers in the blue diagonal correspond to the number of unique interactions imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Wikipathways Chembl
Reactome 9655 0 331 2538 113 97 252 448 55 121 56 182 132 636 135 438 10 251 4 19 320 0 132 0 0 0 0 2 0 0 0
Kegg 0 8847 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1480 591 0 418
Humancyc 331 0 2680 245 9 1 149 346 0 10 18 16 17 95 11 61 0 48 0 0 26 0 1 0 0 0 0 0 0 0 0
Pid 2538 0 245 15514 1365 386 279 338 447 330 74 300 220 1070 212 811 27 369 2 20 950 0 592 7 0 0 0 2 0 0 0
Biocarta 113 0 9 1365 2323 155 54 10 195 118 17 60 48 153 43 135 8 64 0 2 307 0 211 0 0 0 0 0 0 0 0
Netpath 97 0 1 386 155 2567 74 0 322 409 36 279 406 1388 54 1069 20 245 1 2 1514 0 810 0 0 0 0 0 0 0 0
Inoh 252 0 149 279 54 74 1898 387 32 51 10 39 32 95 24 74 1 44 0 0 98 0 61 0 0 0 0 0 0 0 0
Ehmn 448 0 346 338 10 0 387 3893 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
Phosphositeplus 55 0 0 447 195 322 32 0 1654 195 0 0 0 0 0 0 0 0 0 0 692 0 740 0 0 0 0 0 0 0 0
Innatedb 121 0 10 330 118 409 51 0 195 8591 243 285 589 2105 67 2798 34 519 6 1 1428 0 933 6 0 0 0 0 0 0 0
Intact 56 0 18 74 17 36 10 0 0 243 16005 147 4253 5810 51 9032 20 240 0 4 10196 0 287 0 0 0 0 0 0 0 0
Dip 182 0 16 300 60 279 39 0 0 285 147 3259 532 1455 122 1757 42 488 4 4 960 0 377 3 0 0 0 1 0 0 0
Mint 132 0 17 220 48 406 32 0 0 589 4253 532 14973 8087 114 8508 59 1226 2 6 11960 0 1645 53 0 0 0 0 0 0 0
Hprd 636 0 95 1070 153 1388 95 0 0 2105 5810 1455 8087 40484 601 23378 284 4967 33 29 16663 0 7121 92 0 0 0 2 0 0 0
Corum 135 0 11 212 43 54 24 0 0 67 51 122 114 601 1682 329 10 232 0 70 241 0 66 0 0 0 0 0 0 0 0
Biogrid 438 0 61 811 135 1069 74 0 0 2798 9032 1757 8508 23378 329 121533 221 3814 22 19 19321 0 3925 62 0 0 0 0 0 0 0
Mips-mppi 10 0 0 27 8 20 1 0 0 34 20 42 59 284 10 221 323 161 2 0 153 0 39 3 0 0 0 0 0 0 0
Bind 251 0 48 369 64 245 44 0 0 519 240 488 1226 4967 232 3814 161 20899 4 6 2700 0 1206 16 0 0 0 0 0 0 0
Matrixdb 4 0 0 2 0 1 0 0 0 6 0 4 2 33 0 22 2 4 294 0 11 0 1 0 0 0 0 0 0 0 0
Pindb 19 0 0 20 2 2 0 0 0 1 4 4 6 29 70 19 0 6 0 207 21 0 4 0 0 0 0 0 0 0 0
Spike 320 0 26 950 307 1514 98 1 692 1428 10196 960 11960 16663 241 19321 153 2700 11 21 38739 0 3579 59 0 0 0 1 0 0 0
Pig 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20092 0 0 0 0 0 0 0 0 0
Phosphopoint 132 0 1 592 211 810 61 0 740 933 287 377 1645 7121 66 3925 39 1206 1 4 3579 0 10029 20 0 0 0 0 0 0 0
Pdzbase 0 0 0 7 0 0 0 0 0 6 0 3 53 92 0 62 3 16 0 0 59 0 20 101 0 0 0 0 0 0 0
Pharmgkb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 2 1480 0 2 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 13743 550 0 463
Ttd 0 591 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 550 3256 0 137
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Chembl 0 418 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 463 137 0 143270


Number of uniuqe** physical entities shared by databases. The numbers in the blue diagonal correspond to the number of unique physical entities imported from the according interaction data source.
Reactome Kegg Humancyc Pid Biocarta Netpath Inoh Ehmn Phosphositeplus Innatedb Intact Dip Mint Hprd Corum Biogrid Mips-mppi Bind Matrixdb Pindb Spike Pig Phosphopoint Pdzbase Pharmgkb Smpdb Signalink Drugbank Ttd Wikipathways Chembl
Reactome 15901 593 2680 5306 1126 816 1099 1849 1057 1444 2590 1334 2707 4329 1631 5117 282 3267 118 317 3905 1818 1748 63 97 0 0 1900 574 0 994
Kegg 593 3607 369 405 202 86 133 206 183 184 214 163 257 500 136 518 50 329 18 19 383 162 233 15 580 0 0 1259 1243 0 713
Humancyc 2680 369 7933 1940 492 332 1010 2169 600 603 1287 460 1219 2062 500 2793 83 1639 41 96 1936 736 848 33 62 0 0 1505 297 0 840
Pid 5306 405 1940 14899 2092 989 957 1402 1130 1664 2355 1413 2582 3924 1751 4380 307 2946 98 359 4071 1700 1885 66 85 0 0 1456 461 0 818
Biocarta 1126 202 492 2092 2884 498 309 281 544 731 799 630 921 1310 643 1370 186 1034 44 134 1325 682 822 23 41 0 0 532 229 0 403
Netpath 816 86 332 989 498 1469 237 184 530 703 781 583 958 1201 600 1236 171 966 25 114 1211 649 848 25 3 0 0 271 107 0 265
Inoh 1099 133 1010 957 309 237 2314 838 205 252 418 223 414 625 214 769 60 524 14 11 612 292 297 8 26 0 0 639 147 0 230
Ehmn 1849 206 2169 1402 281 184 838 4379 296 295 666 234 626 1047 293 1404 41 838 17 55 971 401 425 18 55 0 0 959 204 0 426
Phosphositeplus 1057 183 600 1130 544 530 205 296 1739 817 1058 693 1239 1604 673 1691 196 1237 29 170 1559 746 1195 37 1 0 0 439 184 0 478
Innatedb 1444 184 603 1664 731 703 252 295 817 3790 1603 921 1777 2430 947 2679 235 1857 69 224 2489 1187 1315 49 5 0 0 547 219 0 423
Intact 2590 214 1287 2355 799 781 418 666 1058 1603 6501 1246 4049 5016 1616 5899 261 3510 60 439 5218 2093 1867 52 8 0 0 934 203 0 548
Dip 1334 163 460 1413 630 583 223 234 693 921 1246 2101 1468 1944 1011 2009 231 1586 59 317 1855 1002 1048 26 15 0 0 481 213 0 362
Mint 2707 257 1219 2582 921 958 414 626 1239 1777 4049 1468 6517 5362 1838 5758 311 3689 79 467 5575 2241 2220 102 10 0 0 952 257 0 605
Hprd 4329 500 2062 3924 1310 1201 625 1047 1604 2430 5016 1944 5362 9844 2275 9238 382 5431 141 596 7746 3035 3093 114 26 0 0 1628 497 0 1056
Corum 1631 136 500 1751 643 600 214 293 673 947 1616 1011 1838 2275 4225 2481 228 1944 48 554 2298 1140 1129 27 3 0 0 440 133 0 298
Biogrid 5117 518 2793 4380 1370 1236 769 1404 1691 2679 5899 2009 5758 9238 2481 15673 382 6630 139 652 8937 3738 3095 111 23 0 0 1890 495 0 1093
Mips-mppi 282 50 83 307 186 171 60 41 196 235 261 231 311 382 228 382 400 363 13 56 373 227 275 15 1 0 0 110 52 0 100
Bind 3267 329 1639 2946 1034 966 524 838 1237 1857 3510 1586 3689 5431 1944 6630 363 9837 112 489 5211 2420 2216 78 18 0 0 1294 348 0 746
Matrixdb 118 18 41 98 44 25 14 17 29 69 60 59 79 141 48 139 13 112 195 2 131 71 58 3 2 0 0 65 29 0 39
Pindb 317 19 96 359 134 114 11 55 170 224 439 317 467 596 554 652 56 489 2 862 606 325 249 1 0 0 0 49 14 0 45
Spike 3905 383 1936 4071 1325 1211 612 971 1559 2489 5218 1855 5575 7746 2298 8937 373 5211 131 606 10913 3009 2838 109 27 0 0 1434 403 0 898
Pig 1818 162 736 1700 682 649 292 401 746 1187 2093 1002 2241 3035 1140 3738 227 2420 71 325 3009 7573 1271 43 8 0 0 630 178 0 376
Phosphopoint 1748 233 848 1885 822 848 297 425 1195 1315 1867 1048 2220 3093 1129 3095 275 2216 58 249 2838 1271 3187 74 6 0 0 664 249 0 613
Pdzbase 63 15 33 66 23 25 8 18 37 49 52 26 102 114 27 111 15 78 3 1 109 43 74 115 0 0 0 26 15 0 24
Pharmgkb 97 580 62 85 41 3 26 55 1 5 8 15 10 26 3 23 1 18 2 0 27 8 6 0 1037 0 0 934 736 0 214
Smpdb 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 411 0 0 0 0 0
Signalink 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Drugbank 1900 1259 1505 1456 532 271 639 959 439 547 934 481 952 1628 440 1890 110 1294 65 49 1434 630 664 26 934 0 0 6608 1396 0 1038
Ttd 574 1243 297 461 229 107 147 204 184 219 203 213 257 497 133 495 52 348 29 14 403 178 249 15 736 0 0 1396 3496 0 677
Wikipathways 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Chembl 994 713 840 818 403 265 230 426 478 423 548 362 605 1056 298 1093 100 746 39 45 898 376 613 24 214 0 0 1038 677 0 93724


Number of defined biological pathways in interaction data sources.***
Reactome 1402
Kegg 264
Humancyc 326
Pid 1478
Biocarta 254
Netpath 26
Inoh 93
Ehmn 69
Phosphositeplus 0
Innatedb 0
Intact 0
Dip 0
Mint 0
Hprd 0
Corum 0
Biogrid 0
Mips-mppi 0
Bind 0
Matrixdb 0
Pindb 0
Spike 0
Pig 0
Phosphopoint 0
Pdzbase 0
Pharmgkb 103
Smpdb 411
Signalink 15
Drugbank 0
Ttd 0
Wikipathways 432
Chembl 0



Versions of integrated databases
Reactome 44
Kegg 66.0
Humancyc 17.0
Pid 2012_09_18
Biocarta 2009_05_12
Netpath 8.5.2013
Inoh 8.5.2013
Ehmn 8.5.2013
Phosphositeplus 8.5.2013
Innatedb 8.5.2013
Intact 2005-11-01Z
Dip 2013-01-31
Mint 2010-12-17+01:00
Hprd I_041210
Corum 8.5.2013
Biogrid 3.2.100
Mips-mppi 9.5.2013
Bind 9.5.2013
Matrixdb 20120801
Pindb 9.5.2013
Spike 9.5.2013
Pig 10.5.2013
Phosphopoint 10.5.2013
Pdzbase 10.5.2013
Pharmgkb 10.5.2013
Smpdb 10.5.2013
Signalink 11.5.2013
Drugbank 11.5.2013
Ttd 11.5.2013
Wikipathways 11.5.2013
Chembl 17.5.2013



* Interactions are mapped to each other if their primary participants (products and substrates in biochemical reactions, interactors in protein interactions and genetic interactions, transcription factors and regulated gene in gene regulatory interactions, and drug and target in drug-target interactions) are identical based on their accession numbers. Different molecule states and subcellular localization are disregarded when calculating the number of unique interactions.
** Physical entities are mapped tp each other if they have the same accession numbers and/or components (in the case of complexes and entity groups). This means that different states (e.g. posttranslational modifications) and subcellular localization are disregarded when calculating the number of unique entities.
*** Biological pathways from different sources are not mapped to each other. Some sources (like the ones containing protein interactions only) do not define pathways.